Detail information of GWHGAAEX006093/evm.TU.scaffold_177.65
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 5.00E-139 | FOG: PPR repeat |
| nr | gi|672112049|ref|XP_008803808.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Phoenix dactylifera] |
| Swissprot | tr|Q9FJY7|PP449_ARATH | 1.00E-139 | Pentatricopeptide repeat-containing protein At5g66520 |
| trEMBL | tr|D7TKU7|D7TKU7_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI31119.3} |
| TAIR | AT5G66520 | 5.00E-139 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000185 | 1293114 | 1295373 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006093
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 76 | 123 | 4.40E-11 |
| PF13041.5 | PPR_2 | 177 | 209 | 9.30E-08 |
| PF01535.19 | PPR | 211 | 241 | 9.20E-07 |
| PF13041.5 | PPR_2 | 310 | 356 | 5.40E-12 |
| PF01535.19 | PPR | 384 | 408 | 0.43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.340 |
| SRR2545915 | Juvenile tuber | 14.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.080 |
| SRR5643514 | five period of Gastrodia elata | 4.280 | |
| SRR5643515 | five period of Gastrodia elata | 6.920 | |
| SRR5643524 | five period of Gastrodia elata | 4.030 | |
| SRR5643525 | five period of Gastrodia elata | 4.240 | |
| SRR5643528 | five period of Gastrodia elata | 3.570 | |
| SRR5643658 | five period of Gastrodia elata | 2.240 | |
| SRR5643659 | five period of Gastrodia elata | 9.710 | |
| SRR5643660 | five period of Gastrodia elata | 9.760 | |
| SRR5643661 | five period of Gastrodia elata | 9.110 | |
| SRR5643662 | five period of Gastrodia elata | 9.610 | |
| SRR5643663 | five period of Gastrodia elata | 6.770 | |
| SRR5643664 | five period of Gastrodia elata | 7.560 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.790 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.190 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.540 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.790 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.15 |
| Juven | Juvenile tuber | 3.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.64 | |
| Mother_Juven | Mother tuber of Juvenile | 2.28 |