Detail information of GWHGAAEX006098/evm.TU.scaffold_177.71


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|189502556|ref|YP_001958273.1|7.00E-20hypothetical protein Aasi_1217 [Candidatus Amoebophilus asiaticus 5a2]
nrgi|743777650|ref|XP_010919261.1|0PREDICTED: probable E3 ubiquitin-protein ligase XBOS33 [Elaeis guineensis]
Swissprottr|Q4FE45|XB33_ARATH0E3 ubiquitin-protein ligase XBAT33
trEMBLtr|D7TMU6|D7TMU6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI31819.3}
TAIRAT5G072700XB3 ortholog 3 in Arabidopsis thaliana

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000018513974101401855+
Transcript Sequence

Network for GWHGAAEX006098

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12796.6Ank_2491321.70E-17
PF00023.29Ank1722011.10E-05
PF12796.6Ank_22062712.20E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.250
SRR2545915Juvenile tuber6.640
SRP108465SRR5643513five period of Gastrodia elata17.070
SRR5643514five period of Gastrodia elata20.160
SRR5643515five period of Gastrodia elata16.970
SRR5643524five period of Gastrodia elata17.930
SRR5643525five period of Gastrodia elata13.250
SRR5643528five period of Gastrodia elata10.790
SRR5643658five period of Gastrodia elata10.830
SRR5643659five period of Gastrodia elata16.450
SRR5643660five period of Gastrodia elata16.430
SRR5643661five period of Gastrodia elata17.660
SRR5643662five period of Gastrodia elata15.470
SRR5643663five period of Gastrodia elata14.980
SRR5643664five period of Gastrodia elata16.640
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.780
SRR6049655Rhizomagastrodiae_C368-T10_good_125.940
SRR6049656Rhizomagastrodiae_C368-T07_good_120.780
SRR6049657Rhizomagastrodiae_C368-T07_good_117.820
SRR6049658Rhizomagastrodiae_C368-T04_good_116.800
SRR6049659Rhizomagastrodiae_C368-T04_good_115.830
SRR6049660Rhizomagastrodiae_C368-T01_good_116.380
SRR6049661Rhizomagastrodiae_C368-T04_good_117.830
SRR6049662Rhizomagastrodiae_C368-T01_good_123.420
SRR6049663Rhizomagastrodiae_C368-T01_good_122.020
SRR6049664Rhizomagastrodiae_C368-T10_good_121.850
SRR6049665Rhizomagastrodiae_C368-T10_good_121.850
SRP279888GastroGastrodia elata tuber 17.81
JuvenJuvenile tuber22.28
Mother_GastroMother tuber of Gastrodia elata 27.39
Mother_JuvenMother tuber of Juvenile 24.47