Detail information of GWHGAAEX006099/evm.TU.scaffold_177.72


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|108805992|ref|YP_645929.1|7.00E-26protein translocase subunit yidC [Rubrobacter xylanophilus DSM 9941]
KOGKOG12392.00E-119Inner membrane protein translocase involved in respiratory chain assembly
nrgi|672159571|ref|XP_008799548.1|2.64E-170PREDICTED: mitochondrial inner membrane protein OXA1-like isoform X1 [Phoenix dactylifera]
Swissprottr|Q42191|OXA1_ARATH6.00E-120Mitochondrial inner membrane protein OXA1 (Precursor)
trEMBLtr|M0TPP2|M0TPP2_MUSAM1.00E-168Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P11890_001}
TAIRAT5G620502.00E-119homolog of yeast oxidase assembly 1 (OXA1)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000018514022571409947-
Transcript Sequence

Network for GWHGAAEX006099

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02096.1960KD_IMP1593503.00E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03217yidC, spoIIIJ, OXA1, ccfA Protein export map03060
Bacterial secretion systemmap03070
Quorum sensingmap02024

Gene Ontology

GO term OntologyName
GO:0032977Molecular Functionmembrane insertase activity
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.310
SRR2545915Juvenile tuber22.900
SRP108465SRR5643513five period of Gastrodia elata18.320
SRR5643514five period of Gastrodia elata21.640
SRR5643515five period of Gastrodia elata17.170
SRR5643524five period of Gastrodia elata17.900
SRR5643525five period of Gastrodia elata14.690
SRR5643528five period of Gastrodia elata19.280
SRR5643658five period of Gastrodia elata12.960
SRR5643659five period of Gastrodia elata22.400
SRR5643660five period of Gastrodia elata27.260
SRR5643661five period of Gastrodia elata26.640
SRR5643662five period of Gastrodia elata23.300
SRR5643663five period of Gastrodia elata21.000
SRR5643664five period of Gastrodia elata25.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.940
SRR6049655Rhizomagastrodiae_C368-T10_good_124.510
SRR6049656Rhizomagastrodiae_C368-T07_good_118.620
SRR6049657Rhizomagastrodiae_C368-T07_good_114.820
SRR6049658Rhizomagastrodiae_C368-T04_good_111.680
SRR6049659Rhizomagastrodiae_C368-T04_good_110.080
SRR6049660Rhizomagastrodiae_C368-T01_good_113.130
SRR6049661Rhizomagastrodiae_C368-T04_good_114.290
SRR6049662Rhizomagastrodiae_C368-T01_good_119.510
SRR6049663Rhizomagastrodiae_C368-T01_good_116.730
SRR6049664Rhizomagastrodiae_C368-T10_good_121.870
SRR6049665Rhizomagastrodiae_C368-T10_good_121.870
SRP279888GastroGastrodia elata tuber 26.71
JuvenJuvenile tuber22.04
Mother_GastroMother tuber of Gastrodia elata 10.76
Mother_JuvenMother tuber of Juvenile 10.83