Detail information of GWHGAAEX006103/evm.TU.scaffold_177.78
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428310074|ref|YP_007121051.1| | 1.00E-22 | WD40 repeat-containing protein [Microcoleus sp. PCC 7113] |
| KOG | KOG0283 | 1.00E-160 | WD40 repeat-containing protein |
| nr | gi|743777694|ref|XP_010919285.1| | 0 | PREDICTED: uncharacterized protein LOC105043440 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q6S7B0|TAF5_ARATH | 9.00E-12 | Transcription initiation factor TFIID subunit 5 |
| trEMBL | tr|M0SYP3|M0SYP3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P15140_001} |
| TAIR | AT5G24320 | 1.00E-160 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000185 | 1567270 | 1572708 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006103
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 255 | 287 | 5.30E-05 |
| PF00400.31 | WD40 | 357 | 392 | 4.60E-07 |
| PF00400.31 | WD40 | 399 | 434 | 6.50E-05 |
| PF00400.31 | WD40 | 545 | 569 | 0.057 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 35.350 |
| SRR2545915 | Juvenile tuber | 28.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 35.270 |
| SRR5643514 | five period of Gastrodia elata | 25.180 | |
| SRR5643515 | five period of Gastrodia elata | 54.110 | |
| SRR5643524 | five period of Gastrodia elata | 29.060 | |
| SRR5643525 | five period of Gastrodia elata | 49.460 | |
| SRR5643528 | five period of Gastrodia elata | 64.120 | |
| SRR5643658 | five period of Gastrodia elata | 40.310 | |
| SRR5643659 | five period of Gastrodia elata | 39.390 | |
| SRR5643660 | five period of Gastrodia elata | 24.270 | |
| SRR5643661 | five period of Gastrodia elata | 31.040 | |
| SRR5643662 | five period of Gastrodia elata | 48.820 | |
| SRR5643663 | five period of Gastrodia elata | 32.190 | |
| SRR5643664 | five period of Gastrodia elata | 77.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 68.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 50.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 51.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 53.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 67.320 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 93.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 54.540 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 33.180 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 80.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 43.550 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 43.550 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 52.85 |
| Juven | Juvenile tuber | 15.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 154.18 | |
| Mother_Juven | Mother tuber of Juvenile | 131.68 |