Detail information of GWHGAAEX006112/evm.TU.scaffold_177.91


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|695026951|ref|XP_009400794.1|1.36E-75PREDICTED: protein SHI RELATED SEQUENCE 1-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9XGX0|SHI_ARATH3.00E-62Protein SHORT INTERNODES
trEMBLtr|M0SYH0|M0SYH0_MUSAM3.00E-77Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P14410_001}
TAIRAT5G663509.00E-62Lateral root primordium (LRP) protein-related

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000018518906151891529+
Transcript Sequence

Network for GWHGAAEX006112

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05142.11DUF7021082382.20E-60
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySRS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.650
SRR2545915Juvenile tuber6.850
SRP108465SRR5643513five period of Gastrodia elata11.930
SRR5643514five period of Gastrodia elata11.300
SRR5643515five period of Gastrodia elata11.110
SRR5643524five period of Gastrodia elata9.670
SRR5643525five period of Gastrodia elata0.600
SRR5643528five period of Gastrodia elata0.410
SRR5643658five period of Gastrodia elata2.080
SRR5643659five period of Gastrodia elata28.990
SRR5643660five period of Gastrodia elata27.460
SRR5643661five period of Gastrodia elata26.250
SRR5643662five period of Gastrodia elata39.580
SRR5643663five period of Gastrodia elata61.960
SRR5643664five period of Gastrodia elata79.830
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_127.670
SRR6049655Rhizomagastrodiae_C368-T10_good_119.340
SRR6049656Rhizomagastrodiae_C368-T07_good_118.960
SRR6049657Rhizomagastrodiae_C368-T07_good_120.510
SRR6049658Rhizomagastrodiae_C368-T04_good_124.840
SRR6049659Rhizomagastrodiae_C368-T04_good_125.030
SRR6049660Rhizomagastrodiae_C368-T01_good_123.770
SRR6049661Rhizomagastrodiae_C368-T04_good_127.890
SRR6049662Rhizomagastrodiae_C368-T01_good_110.750
SRR6049663Rhizomagastrodiae_C368-T01_good_121.170
SRR6049664Rhizomagastrodiae_C368-T10_good_113.990
SRR6049665Rhizomagastrodiae_C368-T10_good_113.990
SRP279888GastroGastrodia elata tuber 44.73
JuvenJuvenile tuber10.21
Mother_GastroMother tuber of Gastrodia elata 7.06
Mother_JuvenMother tuber of Juvenile 6.16