Detail information of GWHGAAEX006118/evm.TU.scaffold_177.98


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34672.00E-66Histone H4
nrgi|195617694|gb|ACG30677.1|8.72E-66histone H4 [Zea mays]
Swissprottr|P0CG89|H4_SOYBN7.00E-67Histone H4
trEMBLtr|Q5NSW2|Q5NSW2_FRAAN5.00E-65Histone H4 {ECO:0000256|RuleBase:RU000528} (Fragment)
TAIRAT5G599702.00E-66Histone superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000018519291341930080-
Transcript Sequence

Network for GWHGAAEX006118

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF15511.5CENP-T_C35961.40E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0005634Cellular Componentnucleus
GO:0000786Cellular Componentnucleosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.280
SRR2545915Juvenile tuber15.780
SRP108465SRR5643513five period of Gastrodia elata98.380
SRR5643514five period of Gastrodia elata131.530
SRR5643515five period of Gastrodia elata81.470
SRR5643524five period of Gastrodia elata104.180
SRR5643525five period of Gastrodia elata39.650
SRR5643528five period of Gastrodia elata31.970
SRR5643658five period of Gastrodia elata23.270
SRR5643659five period of Gastrodia elata21.580
SRR5643660five period of Gastrodia elata20.740
SRR5643661five period of Gastrodia elata22.820
SRR5643662five period of Gastrodia elata24.700
SRR5643663five period of Gastrodia elata40.150
SRR5643664five period of Gastrodia elata14.700
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_156.140
SRR6049655Rhizomagastrodiae_C368-T10_good_185.700
SRR6049656Rhizomagastrodiae_C368-T07_good_196.240
SRR6049657Rhizomagastrodiae_C368-T07_good_152.270
SRR6049658Rhizomagastrodiae_C368-T04_good_133.610
SRR6049659Rhizomagastrodiae_C368-T04_good_121.580
SRR6049660Rhizomagastrodiae_C368-T01_good_152.720
SRR6049661Rhizomagastrodiae_C368-T04_good_162.370
SRR6049662Rhizomagastrodiae_C368-T01_good_1115.480
SRR6049663Rhizomagastrodiae_C368-T01_good_163.130
SRR6049664Rhizomagastrodiae_C368-T10_good_1130.690
SRR6049665Rhizomagastrodiae_C368-T10_good_1130.690
SRP279888GastroGastrodia elata tuber 10.70
JuvenJuvenile tuber13.47
Mother_GastroMother tuber of Gastrodia elata 38.80
Mother_JuvenMother tuber of Juvenile 5.67