Gene detail

Detail information of GWHGAAEX006128/evm.TU.scaffold_177.106

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1913	Regucalcin gene promoter region-related protein (RGPR)
nr	gi\|743832369\|ref\|XP_010934957.1\|	PREDICTED: protein transport protein SEC16A homolog isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9FGK9\|MAG5_ARATH	Protein transport protein SEC16A homolog {ECO:0000305}
trEMBL	tr\|M0S2M3\|M0S2M3_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P24160_001}
TAIR	AT5G47480	RGPR-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000185	2002362	2045834	-

Transcript Sequence
>GWHTAAEX006128 TCCACATCATCCAGCCTTCTTCCCGTGGCTTCTTTATTTATTTTGCTTAAAAGACGAAACAAAAGAATGAAAACTAGTAACAACAGAAGGGATGGGGTAAGAAAACTTGAATCCTCCATCAGCCGAAGTTTGTCGGCAGCTCCAACATGAAGGATTTCGATGCTTCACGAATTGTTTCTGTTCTTCGTTGCTCTGATCTTCAGTTATAGCGCTTTCGCCGATTCGAGCAGTACTGCAAAGTCCTGTAGACTATCTCAGGTGAATGGAGTTGAAGGACTATCGATAGATTGAATATATAGATCCAGAAAGATTTTACAGGCAGTCAGGAAGTGGTCAGATTGTTTTGGCGGCCCTCGTTGATTTCTAGGGCTGAGTTTAGGCGGTGGGAATCCCTTCTGTTATCTCCTTCGCGTGGTTACAGGAAGGAAGAGGGTAATAATTTTTATTGATATGATGGCTTCTTCTCCTCCTCTCCCGGCGGAAGATCAGACGGACGAGGATTTCTTCGACAGGCTGGTGGAGGATGACTTCGGTGTAACGACTTTACACAAAGAATCTAATAAAATGAGCGAAGCATTATTAGGTACGGGCACTTCAGGCGATGGAATGCAGTTAAAGGATTTGAATGATACTAGGGTTGCATATTCTGAGGAAGACAGGTTAGAGAATAAAGACATTGTGGCTTCGCTTATTCTAGAAAGGGAATCTTTGGTATCGGAAGGGAGCTCGTCAGGGAAGTCATGGGATGCTTTTACAATGAATGATGAAGCTGGAACCATCGTTTCCGAAGAAAAGGATGCAGGTTTAGAATCTTCATGTGTATTGCCTGAAGCTGGGCTAGGAGGGCTTACTGAGATCAACTCAGAGGTCCGATCATTGGATTTAGCGGTGGAGGGGACTGGCGGATCTAAAAGTACCGGGGTGAAGGAGGTGCAGTGGAGTTCTTTCTACACTGATTCGCTTCAATTTAGCCTTGGCGGTGTTGAACCCTTTTCAGATTTCTTAATAGAAAATTCAGACGATCCCACCAGTCAGGTAAACATGAATGGTGATCACAAGTCTAGTTTTGTGAACGGAGCAGTTCCGAATCATGAAATGGTTCATGTTTCTTCTGAGCAACCAGCTACTTATTTTTATGGAACAGTCAATGAATTTTCCACTGATGTTAATGGTATTAATCACTGGGAAAATCTTTACCCAGGTTGGAAGTTTGATGCTCTCACTGGACAGTGGTACCAAGTAGATAATAATGATACAACTGCACATTTAGATAGTTGTGATGCATCCACTGTAAATGTTCAAGCGAGTCTCCATGACCATCATATAACAGATAGTAACGAGTTCATCTCAGGCGATACCACAGAGTTCTCTTACTCGCAACAAAGTTCCAGTTTGATGGTTAGAGGTATATCCGAGGATTGCAATACAAATAGAGTATCCAGTTGGAATCAGTATTCTCAAGATAGCAATGGTTACCCTCCAAACATGGTATTCGATCCACAATATCCTGGCTGGTATTTTGACACAAATTCTCAGCAATGGCTTACACTTGATGCATATACTCAGAGCATCCAGCAGATGTCCCCTTCATTTCAAAGCCCGCTAATTGGGGATATGAATGCTTGCAATGGATTTATTGGAGAAGGGAGTTCAAGTTTTTTTGGTGGTGTTTGTTCACTTGAGCATAATGGCATGCAAGGTCAAGGTAACCAAAACGTGGTGAATTCTTTGGATGCATTGACTAATAAATTTGCTCAACATATGATTACTCAGTATGATGCCAAAGATACTAACAAAATGAGCATTTCAGGAAATCAGCAGACATTGACTTTTAATGACACTAAGATGCAGGAAACTAGTTACCCGTTTCAACAAACCAGTTTCAACTCTTGGAATGCCGTTCAAAGCAGTGCTGAATTGAACGACAAAAACCCAGCTGGATTTCAGAATTATGTCCCTGCTGAAAGGGTGCCCCAGTTTAATCAGCCTAAAATAGAGCAAAGCATGCAGTCACATTTTTCTCAAAGCTTTTATAATGACCAGAATTCAGTCAAGTATCATGAACAGAGTTTTCATAACTCATCTTATCCTCATACATCTTATCTAGGCAACCAAGGGAGATCGTCTGATGGTCGTCCTCCTCATGCCTTGGTCACTTTTGGTTTTGGTGGGAAACTTGTGGTCATGAAAAGCCAAAACACCATGGGCATGAAAATGGGATATGATAATGAGGAATCTTCAGAGGCTGCTGTCTTTATTCTGAACTTTATGGAAGTTGTCAAAGACCAAGCTGATATTGCAGAACATTATTTCCATTCTTTATTGCGACATTCTTTTCCAGGGCCACTTGTTGGTGGGAATTGTGCTACAAAGGATGTATACAAATGGATAGATGAGAGCGTAACAAATTGTGAGTCTCCTATAGTGGATCCAAAGTACGGGAAAATAATGAAATTGCTTCTTTCGTTGCTAAAAGTTTTTTGTCAGCATTATGGAAAACTTCGATCTCCATTTGGTTCTGGTGCATCACTTGAGGATAATGATGGACCCGAATCATCTGTAACTAAGCTTTTTGCATCTGCTCGACCAGGTGGTCATTTGACTCGTTGTATGCAGAGCATTCCATCTGAGGCACATATTCAGGCTACTTCTATAGAGATGCAAAACTTACTCGTCTCTGGTAAAAGAACGGAGGCTCTGCAGTGTGCCCAAGTGGGTCAGTTATGGGGTCCTGCTCTTGTTCTTGCAGCACAACTTGGTGAGAAGTGTTATGTTGATACTGTGAAGCAAATGGCACAAAGTCTTCTGGTCAGTGGGTCGCCTCTTAGAACATTGTGCCTTCTTATTGCTGGACAACCTGCTGATGTGTTCTCTTTCGGGAGCTCCACAAATGGTAGCTATTTTGGCATTGCAAAAGGATACGAACATCCTTCGGAGATTCAATCCAACTGCATGCTTGATGATTGGGAGGAGAACATGGCCATCATTACTGCAAATAGAACAAACGATGATGAACTGGTTGTAATCCATCTTGGCGATTGCCTATGGAAGGAGAGAGGAGAGGTCACTGCTGCTCATTGCTGCTACTTAGCTGCTGAAGCAAACATTGAACCATATTCAGACAGCGCAAGACTCTGTCTAATTGGTGCAGATCACTGCAAGTACCCTAGAACTTTTGCCAGTCCTGTTGCTATTCAGAGAACAGAATTATATGAATATGCAAAAGTTCTTGGGAATTCCCAGTTTGTCCTACTCCCTTTTCAGCCATATAAGCTTTTATATGCGAATATGCTTGCTGAGATTGGGAAAACATCTGATTCACTGAGGTACTGTCAAGCAGCTATGAAATTACTTAAAAATTCTACTCGAACCCCTGAAGTAGAAATGTGGAAGTCATTGTTTTCTTCACTTGAAGATAGATTATCTTCTCATCAGCAGGGTGGATACGGTGAAAATTTGGCTCCTGCTAAGCTTGTGGGTAAATTATTTACTTCCATTGATAGGTCAATACATCGTATGATGGGTGCCCCATCATCGTTACCGCCAATGCCGCCTAACTGTGTCAATGGTATAGAAAGTAACATAGTTGCTGCAAAGGTAGTGAGCAGCCAGTCTACAATGGCTATGTCATCTTTAGTTTCATCAGCTTCAATTAATGGCATGAGTGAATGGACAAGTGATACTACCACCAAAGTTTTACACAACAGAAGCATTTCAGAGCCAGATTTTGGTAGAACCCCAAAACAGGATGCATTAAATGATGGCAGTGCTGGCAGTATTCAAAGCAAAGCATCTCCGTCTCGTTTTGGCCGCTTCAGTTCACAGCTCTTGCAGAAGACCATTGGTTTGGTATCAAGAACTCGTCCTGATCGACAGGCAAAATTGGGAGAAAGCAACAAGTTCTATTACGACGAGAAGCTCAAGAGATGGGTGGAAGAGGGGGCAGAGCCTCCTACTGAAAAGGCTGCCTTGCCGCCGCCTCCAAAAGCAGAGTACAACATAAACAATGCCCTGAAGGGCCGAAGCTTCGGCTCCCCTGACGGAGGGCCGGACACAAAATTGGCTGCCCCTATGGACAACTCTGGATTCCCTCCCAGGTCTCCCAGTCCCAACCAATTCTCTGCACGCAGAATGGGCGTCAGATCAAGGTACGTTGATACCTTCAACAAAGGCAGCAGCAATTCACCAGCGAACTCCTTCCAGTCACCATTGGATCCCGCCGTCAAGCCATCCTCAGCGCCCAAATTCTTTGTCCCGACGGCGATCCCCACCTCCGAGGAACAGGCGCCTGCTGATCCTTCCATTGATTTGCCAACCCCGCACTCATCTTCGACCATCGAAAAATCCGCTAGCATGAACAGTATTGACCCCCCACTGAAGAACAAGGAGGCCGCAGCATCACCGAACATGTCTCGCCCGCGTGCAGCCTCGTGGAGCGGTGGCAGCTGGGACTCTGGCAGCGCTAAACTCAGCGAAACTGGCCGCCCTCTTGAGTTCGGAATTGCCGCCTCCTCTCCGTCTTCTTTTCTGCCCTCCTCCACTAATCCGAACCATTCCGGCAGCTTATCACAACGATTCAATGGTGATGATCTTGATGAGGTTGAGCTCTTATAGAAATATTTTCTTAAAAACACACAAGGGGCTTTTTGACATAACTAACACTCAAAATTATATACTATACATATCCTGCATCCAAATTTTTCAATATTTACACAAATAGAGCGGTCATTTTCTCATTTCTAGAGTGGCATTATATCCTCTATATATTTTAAGTAATTCTAGATTGGGTTTAAGAGTATTTTATTTGTAATTATTAAAATTCGGATGCTGGATATATGTATTATAAAGATTTGTATTTTTATATAATGTATACCCTTGAAAATTTTTAACTTTTTTTAATAAACGGCATATGAAAAGTAGGGTTTTGTTGGAGTTTACTTTAAGAAGCTATCTGAAAA

Network for GWHGAAEX006128

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12932.6	Sec16	565	682	1.30E-19
PF12931.6	Sec16_C	737	1021	2.70E-53

Protein Sequence

>GWHPAAEX006128
MMASSPPLPAEDQTDEDFFDRLVEDDFGVTTLHKESNKMSEALLGTGTSGDGMQLKDLNDTRVAYSEEDRLENKDIVASLILERESLVSEGSSSGKSWDAFTMNDEAGTIVSEEKDAGLESSCVLPEAGLGGLTEINSEVRSLDLAVEGTGGSKSTGVKEVQWSSFYTDSLQFSLGGVEPFSDFLIENSDDPTSQVNMNGDHKSSFVNGAVPNHEMVHVSSEQPATYFYGTVNEFSTDVNGINHWENLYPGWKFDALTGQWYQVDNNDTTAHLDSCDASTVNVQASLHDHHITDSNEFISGDTTEFSYSQQSSSLMVRGISEDCNTNRVSSWNQYSQDSNGYPPNMVFDPQYPGWYFDTNSQQWLTLDAYTQSIQQMSPSFQSPLIGDMNACNGFIGEGSSSFFGGVCSLEHNGMQGQGNQNVVNSLDALTNKFAQHMITQYDAKDTNKMSISGNQQTLTFNDTKMQETSYPFQQTSFNSWNAVQSSAELNDKNPAGFQNYVPAERVPQFNQPKIEQSMQSHFSQSFYNDQNSVKYHEQSFHNSSYPHTSYLGNQGRSSDGRPPHALVTFGFGGKLVVMKSQNTMGMKMGYDNEESSEAAVFILNFMEVVKDQADIAEHYFHSLLRHSFPGPLVGGNCATKDVYKWIDESVTNCESPIVDPKYGKIMKLLLSLLKVFCQHYGKLRSPFGSGASLEDNDGPESSVTKLFASARPGGHLTRCMQSIPSEAHIQATSIEMQNLLVSGKRTEALQCAQVGQLWGPALVLAAQLGEKCYVDTVKQMAQSLLVSGSPLRTLCLLIAGQPADVFSFGSSTNGSYFGIAKGYEHPSEIQSNCMLDDWEENMAIITANRTNDDELVVIHLGDCLWKERGEVTAAHCCYLAAEANIEPYSDSARLCLIGADHCKYPRTFASPVAIQRTELYEYAKVLGNSQFVLLPFQPYKLLYANMLAEIGKTSDSLRYCQAAMKLLKNSTRTPEVEMWKSLFSSLEDRLSSHQQGGYGENLAPAKLVGKLFTSIDRSIHRMMGAPSSLPPMPPNCVNGIESNIVAAKVVSSQSTMAMSSLVSSASINGMSEWTSDTTTKVLHNRSISEPDFGRTPKQDALNDGSAGSIQSKASPSRFGRFSSQLLQKTIGLVSRTRPDRQAKLGESNKFYYDEKLKRWVEEGAEPPTEKAALPPPPKAEYNINNALKGRSFGSPDGGPDTKLAAPMDNSGFPPRSPSPNQFSARRMGVRSRYVDTFNKGSSNSPANSFQSPLDPAVKPSSAPKFFVPTAIPTSEEQAPADPSIDLPTPHSSSTIEKSASMNSIDPPLKNKEAAASPNMSRPRAASWSGGSWDSGSAKLSETGRPLEFGIAASSPSSFLPSSTNPNHSGSLSQRFNGDDLDEVELL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0048208	Biological Process	COPII vesicle coating

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	45.720
SRP064423	SRR2545915	Juvenile tuber	41.640
SRP108465	SRR5643513	five period of Gastrodia elata	22.620
	SRR5643514	five period of Gastrodia elata	19.660
	SRR5643515	five period of Gastrodia elata	21.310
	SRR5643524	five period of Gastrodia elata	19.720
	SRR5643525	five period of Gastrodia elata	30.060
	SRR5643528	five period of Gastrodia elata	31.080
	SRR5643658	five period of Gastrodia elata	29.640
	SRR5643659	five period of Gastrodia elata	26.410
	SRR5643660	five period of Gastrodia elata	30.650
	SRR5643661	five period of Gastrodia elata	27.910
	SRR5643662	five period of Gastrodia elata	29.310
	SRR5643663	five period of Gastrodia elata	30.410
	SRR5643664	five period of Gastrodia elata	30.180
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.590
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	25.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.560
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	24.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	23.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.490
SRP279888	Gastro	Gastrodia elata tuber	30.28
	Juven	Juvenile tuber	26.87
	Mother_Gastro	Mother tuber of Gastrodia elata	36.01
	Mother_Juven	Mother tuber of Juvenile	36.76