Gene detail

Detail information of GWHGAAEX006130/evm.TU.scaffold_178.1

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|186686617\|ref\|YP_001869813.1\|	3.00E-34	hypothetical protein Npun_R6612 [Nostoc punctiforme PCC 73102]
KOG	KOG0301	0	Phospholipase A2-activating protein (contains WD40 repeats)
nr	gi\|743761403\|ref\|XP_010941996.1\|	0	PREDICTED: phospholipase A-2-activating protein isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q6S7B0\|TAF5_ARATH	3.00E-18	Transcription initiation factor TFIID subunit 5
trEMBL	tr\|V4SHD8\|V4SHD8_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR36436.1}
TAIR	AT3G18860	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000197	7246	167113	+

Transcript Sequence
>GWHTAAEX006130 ACCTTCATAAACCAAACTAGTTCTATGCGGTCATTCGGCTCAAAGAAGTGAATTGATTGACGGTAAGCAATTCAAGAGTCCACTCTGCTTTAGTTGGTCAGCCTCCAAAAATCTCTTTTCTTCATCGTCAATGGCGCTCGACTCGCGCGAGTACAGGCTAAGCTGCGAACTTCGTGCACACGAAGACGACGTTCGAGGAATCTGTATATGCAATGGATTTGGGATTGCCACTTCGTCAAGGGACCGGACAGTGAGGTACTGGACCCGGGATCCCGTAAAGAAGCATATGTATGTGCTATCGAAGACCTTCATTGGGCACTCTAGCTTCGTTGGACCCCTCGCATGGATTCCTCCCTGTGAGCGGTTCCCAGATGGAGGGATCGTGTCAGGTGGAATGGACACGTTCGTTTTACTTTGGGATTTGAGGACGGGGGAGAACGTGGAAACGATGAAGGGGCATAATATGCAGGTCACGGGACTTGTAGTCGATGACAACGGGGACATCATTTCATCGTCCATTGATTGCACGATCCGTCGGTGGAGGAAAGGTTGTGAAGTTGAACTTTGGGAAGCTCATAAGGTCGCTGTACAAGCAGTAGTTAGGCTGCCTTCCGGAGAATTTATCACTGGTTCCAGTGATTCTACTATTAAGCTTTGGAAGGGAAAAAACTGCCAGCATACATTTTTGGGCCACACAGATACAGTACGTGGTCTAGCTATTTTTCCAGGTTTGGGAATTGTTTCTGCATCACATGATTCCTCTGTAAGACTTTGGGCTTTAACTGGCCAAGTTTTGATGGAGATGATGGGCCATTCTTCTTTAGTTTATTGTGTAGATGCACATTTATCTGGGCTTGTTGCAAGTGGGAGTGAAGATTGCACCCTCAAGATATGGAAAGATGGGGCATGTGTTCAAAGCATTGAGCACCCTGGGTGTGTTTGGGATGCCAAGTTTTTGGAGAATGGAGATGTTGTAACTGCATGTTCTGATGGAGTTGTAAGAATTTGGACAATACATAGTGATCGAATTGCTGATTGTTTAGATCTTGAAGCATATGCAATGGAACTCTCTCATTATAAAATTAACAGGAAGAAAGTTGGTGGTTTGAAGTTGTCAGATCTTCCAGGTTTGGAGGCTTTGCAAAGTCCAGGTACAACTCAAGGACAGACTAAAGTTGTAAGAGAAGGGGATAATGGTATTGCTTACTCATGGAATGCAAAGGAGTATAAATGGGATAAGATTGGTGAAGTTGTTGATGGGCCAGGAGAAGGAATTTGTAAACCTTTAGTTGATGGCATTCAGCATGACTATGTTTTTGATGTTGATATTGGTGATGGCGATCCCATTCGTAAGCTACCATACAACCGAGGAGATAACCCTTACGAAGTTGCTGATAAATGGCTTTTGAAGGAAAATCTTCCCCTTTCTTACCGCCAACAAATTGTAGAATTTATACTACAAAATTCTGGGCAGAGGGACTTTTCATTTGATGCTTCATTTCGTGATCCTTACACTGGCTCTAGTGCATATATACCTGGAGGAACAACATTTTCTTTAGGCACCATGGAAAAACCTACTTACAAACATATTCCAAAGAAAGGAATGCTTCTCTTTGAGACTGCACAATTTGATGGTATTCTGAAGAAAATTGTGGAATTTAATGTGGAGCTTTCAGCTGAAATGGACCAAAACACATTTTCTTTGTCAGAGCTCGAGTTATCTAGGTTATCAGCAATTATAAATTTATTAAAAGACACAGCCCATTACCACCGCAGTACATTTGCTGATACTGACCTTATGTTATTGTTGAAAATTTTAAAATCGTGGCCAATTTCTATGATTTTTCCAGTAATAGACATTTTAAGAATGCTAATTATTCATCCTGATGGGGCGAGTAAACTTCTCAAGCACATTGAACAGGGAAATGATGTATTCCTGGAGATTTTAAAAAGAACCACAGCGGCACCAGTGATTACTGGAAACCTTTTGACCAACATACGAGTCATCGCTAATCTCTTTAAGCACTCTTTCTTCTCTTGTTGGTTACAAGTTCACTGTAGTGCGATTCTCGATGCATTATCAAACTGTCAACCATCATTTAACAAGAGTGTACATTTATCTTTCTCAACATTGGTTCTCAACTATTGTGTCCTGTTAATTGGGTTGAAGGATGCTGAAGGCCAAGGTCAAGTTCTATCTGCTGCTCTCGAGATTGCTGAGGATCGGAGTGTTACTGATGATTCAAAATACAGAGCACTAGTTGCAATCGGATCACTCATGTTAGAAGGTTCTGTGAAACAAATTGCAGTTGCCTTTGATGTTCAAAGTATAGCAAGAGAGGCAAAAGCCTCCAAGGACGCCAAGATTGCCGATGTGGGAGCCGACATTGAAAGTTTGCTTGCATCTCCCTCGCCGCCGTTGTGACTTTAGTATCTTGGCTGGTTGGTAGCTCAGATATGCTCTTTCTTAACATGTCTTCCATATTTACATGTCTAATATCTTTTATTGAAAGATGTACTATTGGAAGATTTGTGAAACCCGGTTCTTATCTGCTGTCATCTCCTAATGCTTAAAGACTACTCTGTTTCTTTGTTCCAGGTGAAATTCATATGTGCATTTATGCTGTGTTGGT

Network for GWHGAAEX006130

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	101	137	0.012
PF00400.31	WD40	147	177	0.061
PF00400.31	WD40	180	215	0.00034
PF00400.31	WD40	221	256	0.00085
PF00400.31	WD40	259	293	0.0011
PF09070.10	PFU	340	448	2.30E-35
PF08324.10	PUL	487	752	4.00E-52

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14018	PLAA, DOA1, UFD3	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.090
SRP064423	SRR2545915	Juvenile tuber	49.160
SRP108465	SRR5643513	five period of Gastrodia elata	45.920
	SRR5643514	five period of Gastrodia elata	43.190
	SRR5643515	five period of Gastrodia elata	39.790
	SRR5643524	five period of Gastrodia elata	40.890
	SRR5643525	five period of Gastrodia elata	19.040
	SRR5643528	five period of Gastrodia elata	21.050
	SRR5643658	five period of Gastrodia elata	24.080
	SRR5643659	five period of Gastrodia elata	33.710
	SRR5643660	five period of Gastrodia elata	33.730
	SRR5643661	five period of Gastrodia elata	29.200
	SRR5643662	five period of Gastrodia elata	27.050
	SRR5643663	five period of Gastrodia elata	29.750
	SRR5643664	five period of Gastrodia elata	26.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	45.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	46.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.800
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	57.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	54.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	52.170
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	47.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	49.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.180
SRP279888	Gastro	Gastrodia elata tuber	36.84
	Juven	Juvenile tuber	59.46
	Mother_Gastro	Mother tuber of Gastrodia elata	62.29
	Mother_Juven	Mother tuber of Juvenile	55.16