Detail information of GWHGAAEX006131/evm.TU.scaffold_178.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|375006936|ref|YP_004980566.1|9.00E-4350S ribosomal protein L18 [Geobacillus thermoleovorans CCB_US3_UF5]
KOGKOG18704.00E-67Ubiquitin C-terminal hydrolase
nrgi|568849589|ref|XP_006478532.1|4.26E-70PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Citrus sinensis]
Swissprottr|Q9SX68|RK18_ARATH1.00E-6750S ribosomal protein L18, chloroplastic (Precursor)
trEMBLtr|M1A0E2|M1A0E2_SOLTU4.00E-70Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400011931}
TAIRAT1G483504.00E-67Ribosomal L18p/L5e family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000197169415175878+
Transcript Sequence

Network for GWHGAAEX006131

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00861.21Ribosomal_L18p661841.10E-44
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02881RP-L18, MRPL18, rplR Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.510
SRR2545915Juvenile tuber9.860
SRP108465SRR5643513five period of Gastrodia elata18.180
SRR5643514five period of Gastrodia elata24.150
SRR5643515five period of Gastrodia elata18.160
SRR5643524five period of Gastrodia elata22.320
SRR5643525five period of Gastrodia elata22.960
SRR5643528five period of Gastrodia elata19.070
SRR5643658five period of Gastrodia elata17.480
SRR5643659five period of Gastrodia elata23.500
SRR5643660five period of Gastrodia elata21.580
SRR5643661five period of Gastrodia elata24.800
SRR5643662five period of Gastrodia elata21.980
SRR5643663five period of Gastrodia elata23.930
SRR5643664five period of Gastrodia elata21.220
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.610
SRR6049655Rhizomagastrodiae_C368-T10_good_113.330
SRR6049656Rhizomagastrodiae_C368-T07_good_116.370
SRR6049657Rhizomagastrodiae_C368-T07_good_111.950
SRR6049658Rhizomagastrodiae_C368-T04_good_19.530
SRR6049659Rhizomagastrodiae_C368-T04_good_18.400
SRR6049660Rhizomagastrodiae_C368-T01_good_19.010
SRR6049661Rhizomagastrodiae_C368-T04_good_112.720
SRR6049662Rhizomagastrodiae_C368-T01_good_115.600
SRR6049663Rhizomagastrodiae_C368-T01_good_110.860
SRR6049664Rhizomagastrodiae_C368-T10_good_118.640
SRR6049665Rhizomagastrodiae_C368-T10_good_118.640
SRP279888GastroGastrodia elata tuber 29.90
JuvenJuvenile tuber22.85
Mother_GastroMother tuber of Gastrodia elata 20.12
Mother_JuvenMother tuber of Juvenile 20.14