Detail information of GWHGAAEX006138/evm.TU.scaffold_178.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|256821516|ref|YP_003145479.1|4.00E-41NADH-quinone oxidoreductase subunit B [Kangiella koreensis DSM 16069]
KOGKOG16879.00E-52NADH-ubiquinone oxidoreductase, NUFS7/PSST/20 kDa subunit
nrgi|475625603|gb|EMT33031.1|1.55E-51NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial [Aegilops tauschii]
Swissprottr|Q42577|NDUS7_ARATH3.00E-52NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial (Precursor)
trEMBLtr|W5DCT1|W5DCT1_WHEAT4.00E-52Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_3DL_B28AAA2EE.1} (Fragment)
TAIRAT5G117709.00E-52NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000197289574300759+
Transcript Sequence

Network for GWHGAAEX006138

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01058.21Oxidored_q6611241.10E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03940NDUFS7 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Retrograde endocannabinoid signalingmap04723
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0051539Molecular Function4 iron, 4 sulfur cluster binding
GO:0008137Molecular FunctionNADH dehydrogenase (ubiquinone) activity
GO:0051536Molecular Functioniron-sulfur cluster binding
GO:0048038Molecular Functionquinone binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.790
SRR2545915Juvenile tuber11.710
SRP108465SRR5643513five period of Gastrodia elata24.100
SRR5643514five period of Gastrodia elata28.920
SRR5643515five period of Gastrodia elata20.400
SRR5643524five period of Gastrodia elata36.890
SRR5643525five period of Gastrodia elata34.570
SRR5643528five period of Gastrodia elata57.280
SRR5643658five period of Gastrodia elata51.990
SRR5643659five period of Gastrodia elata24.520
SRR5643660five period of Gastrodia elata29.510
SRR5643661five period of Gastrodia elata20.270
SRR5643662five period of Gastrodia elata29.730
SRR5643663five period of Gastrodia elata26.960
SRR5643664five period of Gastrodia elata27.140
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_134.230
SRR6049655Rhizomagastrodiae_C368-T10_good_115.100
SRR6049656Rhizomagastrodiae_C368-T07_good_137.670
SRR6049657Rhizomagastrodiae_C368-T07_good_122.780
SRR6049658Rhizomagastrodiae_C368-T04_good_127.800
SRR6049659Rhizomagastrodiae_C368-T04_good_133.040
SRR6049660Rhizomagastrodiae_C368-T01_good_129.580
SRR6049661Rhizomagastrodiae_C368-T04_good_126.790
SRR6049662Rhizomagastrodiae_C368-T01_good_152.020
SRR6049663Rhizomagastrodiae_C368-T01_good_141.090
SRR6049664Rhizomagastrodiae_C368-T10_good_153.430
SRR6049665Rhizomagastrodiae_C368-T10_good_153.430
SRP279888GastroGastrodia elata tuber 14.26
JuvenJuvenile tuber7.31
Mother_GastroMother tuber of Gastrodia elata 19.35
Mother_JuvenMother tuber of Juvenile 6.66