Detail information of GWHGAAEX006139/evm.TU.scaffold_178.13


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16767.00E-107K-homology type RNA binding proteins
nrgi|695031819|ref|XP_009403436.1|2.14E-159PREDICTED: far upstream element-binding protein 2-like [Musa acuminata subsp. malaccensis]
trEMBLtr|M0T493|M0T493_MUSAM1.00E-159Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P04950_001}
TAIRAT2G259707.00E-107KH domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000197301982310959+
Transcript Sequence

Network for GWHGAAEX006139

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00013.28KH_11331987.10E-16
PF00013.28KH_12272922.20E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms51.110
SRR2545915Juvenile tuber53.920
SRP108465SRR5643513five period of Gastrodia elata74.090
SRR5643514five period of Gastrodia elata70.180
SRR5643515five period of Gastrodia elata75.020
SRR5643524five period of Gastrodia elata69.940
SRR5643525five period of Gastrodia elata77.980
SRR5643528five period of Gastrodia elata69.690
SRR5643658five period of Gastrodia elata75.180
SRR5643659five period of Gastrodia elata82.870
SRR5643660five period of Gastrodia elata94.360
SRR5643661five period of Gastrodia elata83.140
SRR5643662five period of Gastrodia elata85.010
SRR5643663five period of Gastrodia elata77.510
SRR5643664five period of Gastrodia elata93.280
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_193.340
SRR6049655Rhizomagastrodiae_C368-T10_good_180.100
SRR6049656Rhizomagastrodiae_C368-T07_good_198.550
SRR6049657Rhizomagastrodiae_C368-T07_good_1103.860
SRR6049658Rhizomagastrodiae_C368-T04_good_1118.810
SRR6049659Rhizomagastrodiae_C368-T04_good_1115.630
SRR6049660Rhizomagastrodiae_C368-T01_good_1110.540
SRR6049661Rhizomagastrodiae_C368-T04_good_1106.970
SRR6049662Rhizomagastrodiae_C368-T01_good_181.210
SRR6049663Rhizomagastrodiae_C368-T01_good_199.330
SRR6049664Rhizomagastrodiae_C368-T10_good_174.100
SRR6049665Rhizomagastrodiae_C368-T10_good_174.100
SRP279888GastroGastrodia elata tuber 111.61
JuvenJuvenile tuber108.52
Mother_GastroMother tuber of Gastrodia elata 118.10
Mother_JuvenMother tuber of Juvenile 100.15