Gene detail

Detail information of GWHGAAEX006148/evm.TU.scaffold_178.24

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743799384\|ref\|XP_010925461.1\|	5.76E-69	PREDICTED: troponin T, skeletal muscle [Elaeis guineensis]
trEMBL	tr\|A0A096RLC2\|A0A096RLC2_MAIZE	2.00E-46	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GRMZM2G101707_P01}
TAIR	AT3G13780	4.00E-30	SMAD/FHA domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000197	613946	616796	-

Transcript Sequence
>GWHTAAEX006148 GTAGGATTTAAATCTTTGAATTATTAAGAATTTAAGTCCAAAAATCTTAACTACTATACCACAATCATTCAATTTGCATCAAAATCACTATAATTACAACGTTTAACTCGGTTTACTCTTGTCGCTCTTGAAATCAGCTAGATACAGCGCTAGGGCGTTCCCCTGCACCCGCATCACTTCACGAAGTCAGCATGGAGCTTCAACAACAAGATGGCAATTTGATTCCCATAGAACTCGGATCAACGATTTTGATCGGAAGACGACTAGGGTTACCGTTAGGGTCTTCCTCCCTCGATCGCTCCATCTCCCGCCACCATGTGAGCCTCCAGATTCTGGAAACCACAGAAAGAAAGGCCGATACTCTCGATCAACACGAGAAACTTCTACTATCGTTTGAAGTCGTTGGTAAAAATCCCATCTTGGTTTGTGCCAAAGACGGGACAGGAAAAAAGATATATAGGAGGCCAGAGAAAGGAGTATTAAAGGCAGGCGACAACTTCTCCTTATCAATAAAAAACCCTAATTTTTTCGCCGTTAAGAGGAAGGAAGGAAAGAAGGGCGGGGTGGAGAGCAGCATACTGGATGCCGTTGCAAGACGAGAGAGAAGAACGTGGGAGCGAAGGAAAGTGACCGAAGAAGAAAATTCAAACTTTGAGGGGTTTGATGGTGAATACGAAGAATTGGTTTGCGTTGGCATGGATTTGCAGATTGGTTCCTTTGATGTTTCAGAGATTGATCCAGTGCAAGAGTTTGGATTCTTGGTGAAGGGTCATGAGTTTGATCGCTATCCCAGGCACAAAATTCGTCCTTTAAAGGAATGGAGATGGTTTCTCGAGGAACCTCGGGGTGTGAGTAGTGAAGATGATGAAGCTTTTGGAAACAATTTGAAGGGCAAGCATCTGAAAAAAAAGAAAGGAGATGATAACAATGATGATGACTGGACCATAGAGAGTGGGGATGTGAATATTATGGATGCAAAACCTGGGAGTGCTAAGCGACCCAGATACTCTACAAGATCTAAAGATTCAAAGAAACTGCGCCTCAATAATTGGGACCTAAAGAAAATTGTCGCAGAAGGATTGAATGATAAACAGAAAGAACTTGATGATGAGGATGATGAGACACTGGGAGGGTTTATTGTTAGTGATGATGATGATATAGAAGAAGACAAAGAACAAGTGTTAGAAGAAACAGACATAGAGGAGGAAGAAGGTGATGATGAGGAATCTGATGTTGACTAACTAATTCTACTGCTTCAGCTCACCCTAAAATTTTATAGTTTGGATTTGAAATTGCTGTGTTTTCTAATATTCCTGATTTGTTTATATGCAAGCGCCAACTATTGTATGATTACATGTTGGTATCATTCATCTTTTGTTGCCTGTTAATTCTGAGTTCTCTTTTGATTACTGATTAAAGAAAGAGAAATGCGCATATTTGCTTTCTTGAATAAATCAAACCTTTGAGAC

Network for GWHGAAEX006148

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.090
SRP064423	SRR2545915	Juvenile tuber	7.550
SRP108465	SRR5643513	five period of Gastrodia elata	2.860
	SRR5643514	five period of Gastrodia elata	3.530
	SRR5643515	five period of Gastrodia elata	3.460
	SRR5643524	five period of Gastrodia elata	3.400
	SRR5643525	five period of Gastrodia elata	8.490
	SRR5643528	five period of Gastrodia elata	6.520
	SRR5643658	five period of Gastrodia elata	11.820
	SRR5643659	five period of Gastrodia elata	5.100
	SRR5643660	five period of Gastrodia elata	5.100
	SRR5643661	five period of Gastrodia elata	4.630
	SRR5643662	five period of Gastrodia elata	3.650
	SRR5643663	five period of Gastrodia elata	4.860
	SRR5643664	five period of Gastrodia elata	4.550
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.970
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.400
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.810
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.020
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.070
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.500
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.930
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.820
SRP279888	Gastro	Gastrodia elata tuber	7.48
	Juven	Juvenile tuber	10.28
	Mother_Gastro	Mother tuber of Gastrodia elata	11.85
	Mother_Juven	Mother tuber of Juvenile	9.51