Detail information of GWHGAAEX006150/evm.TU.scaffold_178.26
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|16078629|ref|NP_389448.1| | 2.00E-20 | calcium-transporting ATPase [Bacillus subtilis subsp. subtilis str. 168] |
| KOG | KOG0206 | 0 | P-type ATPase |
| nr | gi|743799366|ref|XP_010925457.1| | 0 | PREDICTED: putative phospholipid-transporting ATPase 4 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9LNQ4|ALA4_ARATH | 0 | Putative phospholipid-transporting ATPase 4 |
| trEMBL | tr|U5CQ65|U5CQ65_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN15321.1} |
| TAIR | AT1G17500 | 0 | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000197 | 627269 | 632227 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006150
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16209.4 | PhoLip_ATPase_N | 44 | 111 | 2.60E-23 |
| PF13246.5 | Cation_ATPase | 542 | 646 | 6.50E-12 |
| PF16212.4 | PhoLip_ATPase_C | 904 | 1154 | 4.60E-86 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015914 | Biological Process | phospholipid transport |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0000287 | Molecular Function | magnesium ion binding |
| GO:0140326 | Molecular Function | ATPase-coupled intramembrane lipid transporter activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.610 |
| SRR2545915 | Juvenile tuber | 46.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.430 |
| SRR5643514 | five period of Gastrodia elata | 19.460 | |
| SRR5643515 | five period of Gastrodia elata | 18.820 | |
| SRR5643524 | five period of Gastrodia elata | 16.080 | |
| SRR5643525 | five period of Gastrodia elata | 31.260 | |
| SRR5643528 | five period of Gastrodia elata | 21.720 | |
| SRR5643658 | five period of Gastrodia elata | 66.750 | |
| SRR5643659 | five period of Gastrodia elata | 19.290 | |
| SRR5643660 | five period of Gastrodia elata | 18.220 | |
| SRR5643661 | five period of Gastrodia elata | 19.910 | |
| SRR5643662 | five period of Gastrodia elata | 21.610 | |
| SRR5643663 | five period of Gastrodia elata | 24.800 | |
| SRR5643664 | five period of Gastrodia elata | 19.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.370 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 27.09 |
| Juven | Juvenile tuber | 13.45 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 26.90 | |
| Mother_Juven | Mother tuber of Juvenile | 16.76 |