Gene detail

Detail information of GWHGAAEX006151/evm.TU.scaffold_178.29

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1721	6.00E-113	FOG: Zn-finger
nr	gi\|672138897\|ref\|XP_008793218.1\|	2.50E-166	PREDICTED: zinc finger protein NUTCRACKER-like [Phoenix dactylifera]
Swissprot	tr\|Q8H1F5\|IDD7_ARATH	4.00E-113	Protein indeterminate-domain 7 {ECO:0000303\|PubMed:16784536}
trEMBL	tr\|M0SW74\|M0SW74_MUSAM	4.00E-151	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P06450_001}
TAIR	AT1G55110	6.00E-113	indeterminate(ID)-domain 7

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000197	676985	680593	+

Transcript Sequence
>GWHTAAEX006151 TCTCTCTCTCTCTCTCTCTTTTCTCTCCTTTAGGTTTTATAATTCTCGATCAAGTCCAGGTATTGTTTATTTGTTTATTTTGTGTGTGGCGATTGAATCAGATCCGAGAGAGCGCCGCTGATTCTGCGATCGATAGATCTGATGATGATGATGCCGCCGGCGGAGGAGAGCGTGTCGAACCTGACGTCGGCGGGGTCCGGAGAGGCGAGCGTGGGGTCCAGCCAGCAGCAGCAGCCGGCGAAGAGGAAGCGGTGCCTTCCGGGTAACCCAGACCCGGAGGCCGAGGTGGTGGCGCTGTCGCCGAAGGCTCTGATGGCGACCAACCGGTTCGCGTGCGAGGTCTGCGGGAAGGGTTTCCAGAGGGATCAGAACCTGCAGCTCCACAGGAGGGGACACAACCTGCCGTGGAAGCTCAAGCAGAGGCCGCCGGGGAAGGAGGTGAGGAAGAAGGTGTACGTGTGCCCTGAGATCACGTGCGTCCACCACGATCCATCGCGTGCCCTGGGTGATCTCACCGGAATCAAGAAGCACTTCAGCCGGAAGCACGGGGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAGTACGCCGTTCAGTCCGACTGGAAGGCTCACTCCAAGGTCTGCGGCACCAGGGAGTACCGCTGCGACTGCGGAACCCTCTTCTCCCGGAGGGACAGCTTCATCACCCACAGAGCCTTCTGCGACGCGCTGGCGGAGGAGAGCGCACGGCAAATGACAGCGAACTCTTTCATCGGCAGCCACACGCTTATGTTCTCTCCCCCGCCTCCGCCGCCGACCCCTGCGATGCTTCAGACGCAGTTTCCGCATTTGATGAAAATGACGGCGGCGGCAGAAGCTGTCTCCGACGACGAAGGCGGCAGCAACAGCAACCGCAACAGTGGTTTCATCATCGCGGCGCAAGGAGGGTTGCACGAGTTCAAGAAAGAGACGCAGCAGCCGCCTCTTAGCATGAGAACAGATATCCCTGCATGGCTCTCATGCCCGGACACCGCAAGCGCTACCACTGCCACGACATCTTCATTCAACTATCTAGATTTCAATGCTCCGCTCTACGCCTCGAGAATAGACCAAGAGTTCTTGCAAGAGAAGGAGACGGCTCATCACTTCATTCCGGCAGTGCCGTCGGCTCCGCACATGTCAGCCACCGCGCTGCTGCAGAAGGCAGCGCAGATGGGAGCGACGATGAGCCGGCCGACGGCGATCCACTCTCAGATGGCCGGCCATGACCAGGAGATATTGACTCTGCATGGGTCAACGAGTCAAGGCCCGTATCTTCAGGATCTCACTGTCTTTGACCATATGGGAAGGATGGAGGAAGGATCCAACGCTGGAGGGAGCGCAGCAGGGAATGATGGGTTGACCAGAGACTTCTTAGGACTCAGAGCTTTCTCACATAGGGATCTTTTCAATATGGCTGGACTCGAGACCTGCATGAGCACAACAACGTCTTACGAGCAGCAGCGCAAAAAGTCATGGCAGGAAAATTAAATGGTATGCCAAATTACCCCCTTTTGTTAATGTTATTTTCTATAAAGCCAACAAGAAAATAAGAAAAAAAAGAGCTGGCTGGCGAATTCTATATTTGCTTAGAGAGTTTTCTGTATCATACTGTCTTTAATTTTTCTTTTTTGTCTAAAGGCGGGAAAAAGTTGATTCCTTTCTATTTTTCACCCATCCCTCGTTTATTTATTATATATGTGGCACTCGCACCTACCTTCAAAATATGTATTTATATAATTTGTATATGTAAATTATGTCAGCATTATATCATACGATTTCAATACTTCTGATTTATATCTGTTTTAGTGCTTGCACGCATTTAGAAAACCAAAAGCAATAAAGAAAAACAAACAAATATACAATAAGAAGCTTGATTTCTAGGTTTAGAATGGTGGATGAAGATGACTATAGATTTCCTTAATTGTGTTTCATAATTTAATCAAACATCTTAAGACTATAACATGGCAAATACTCATTAAATATTCATCCAGCTAGACAGGCATGAGCTTGAACTCTAAAGTAACGTTCTTCCAAATGCTAAAATTTGGTTCAGATGCAATAGTGGAGACTTAAATTGTTATAATATTGTCAGTCGATACATATATAATTAGATATCGCATCATCGCACGCAATTAGCAGTCTAACTTGATTTTCCTGATGTATAATTAGCCTTTTTGCTTAGAGTATATTGCAATTGTCAAAAATTGTTCTTAACATTGAATCTAAGCTTAAGTTGATACCAATGGAAGCTACAAAAATTTTTAAATTGAAATTTTTCTTAGAAGAAGTTGAGCTCAATGAGTTATTATGTGATTGACGGGATTTGAACCTTGGCCTGTCAAGAGTTTAAATTCAAAGACTATGACTACTGGGCTGCAACACCTTTCATTGAATTGAAATTTTCATTGTCGTATTCCTAGAAAAAGGAGCAAAATTTTTTGATAGTACTATTCGTGCAAGTATTTGATATATCATTGTGAAATCTTATGAAGCAATAATCTGCAAATTCTAATTTGTATTATGAGTTAACAAAAGATATAATTAGGTTATATAAAGCCCTTTTTAAGGTTACTTTTCATCTAATTCACTAAATAGGCCTCTTTTTTCTTTAGTTTTCAAAATTATAAAATTCAAAAAGTCTCATCATAGTATGATCATCCAAGTTTGACAAGCTTCAAAATAAAATATGTTCTATATCTTGCTTTTTCTCCAAAACATATATCCAAAATTCACTTCAAATGTTTGGCATTATAATTAGTATTGCAGTTTTTTTTCTTGAACCTTCAATATTTCATCAACATCACCGTTAAATAATAATATCATCCCAAAAATTTATAGCAATT

Network for GWHGAAEX006151

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.810
SRP064423	SRR2545915	Juvenile tuber	28.890
SRP108465	SRR5643513	five period of Gastrodia elata	66.660
	SRR5643514	five period of Gastrodia elata	63.440
	SRR5643515	five period of Gastrodia elata	57.060
	SRR5643524	five period of Gastrodia elata	54.820
	SRR5643525	five period of Gastrodia elata	64.930
	SRR5643528	five period of Gastrodia elata	54.220
	SRR5643658	five period of Gastrodia elata	64.160
	SRR5643659	five period of Gastrodia elata	58.490
	SRR5643660	five period of Gastrodia elata	78.230
	SRR5643661	five period of Gastrodia elata	66.550
	SRR5643662	five period of Gastrodia elata	68.310
	SRR5643663	five period of Gastrodia elata	64.280
	SRR5643664	five period of Gastrodia elata	79.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	85.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	68.980
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	79.390
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	96.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	108.860
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	123.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	103.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	96.260
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	73.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	88.770
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	74.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	74.060
SRP279888	Gastro	Gastrodia elata tuber	57.97
	Juven	Juvenile tuber	95.67
	Mother_Gastro	Mother tuber of Gastrodia elata	56.42
	Mother_Juven	Mother tuber of Juvenile	47.67