Detail information of GWHGAAEX006152/evm.TU.scaffold_178.30


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|42521960|ref|NP_967340.1|6.00E-10RNA-binding protein [Bdellovibrio bacteriovorus HD100]
KOGKOG01188.00E-66FOG: RRM domain
nrgi|695043334|ref|XP_009409355.1|2.96E-101PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q8W034|RNP1_ARATH8.00E-54Heterogeneous nuclear ribonucleoprotein 1
trEMBLtr|M0TH85|M0TH85_MUSAM2.00E-102Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P13480_001}
TAIRAT1G176408.00E-66RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000197727875741252-
Transcript Sequence

Network for GWHGAAEX006152

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1941612.20E-13
PF00076.21RRM_11832501.80E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12741HNRNPA1_3 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms131.860
SRR2545915Juvenile tuber140.350
SRP108465SRR5643513five period of Gastrodia elata204.530
SRR5643514five period of Gastrodia elata184.270
SRR5643515five period of Gastrodia elata172.690
SRR5643524five period of Gastrodia elata187.000
SRR5643525five period of Gastrodia elata167.790
SRR5643528five period of Gastrodia elata173.480
SRR5643658five period of Gastrodia elata156.180
SRR5643659five period of Gastrodia elata255.500
SRR5643660five period of Gastrodia elata270.130
SRR5643661five period of Gastrodia elata268.880
SRR5643662five period of Gastrodia elata238.310
SRR5643663five period of Gastrodia elata217.940
SRR5643664five period of Gastrodia elata287.190
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1159.630
SRR6049655Rhizomagastrodiae_C368-T10_good_1132.520
SRR6049656Rhizomagastrodiae_C368-T07_good_1176.710
SRR6049657Rhizomagastrodiae_C368-T07_good_1177.760
SRR6049658Rhizomagastrodiae_C368-T04_good_1133.340
SRR6049659Rhizomagastrodiae_C368-T04_good_1139.160
SRR6049660Rhizomagastrodiae_C368-T01_good_1177.920
SRR6049661Rhizomagastrodiae_C368-T04_good_1144.820
SRR6049662Rhizomagastrodiae_C368-T01_good_1161.370
SRR6049663Rhizomagastrodiae_C368-T01_good_1163.210
SRR6049664Rhizomagastrodiae_C368-T10_good_1195.340
SRR6049665Rhizomagastrodiae_C368-T10_good_1195.340
SRP279888GastroGastrodia elata tuber 204.47
JuvenJuvenile tuber329.80
Mother_GastroMother tuber of Gastrodia elata 106.34
Mother_JuvenMother tuber of Juvenile 208.23