Detail information of GWHGAAEX006157/evm.TU.scaffold_178.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|147677798|ref|YP_001212013.1| | 6.00E-08 | Kef-type K+ transporter NAD-binding component [Pelotomaculum thermopropionicum SI] |
| KOG | KOG1418 | 6.00E-133 | Tandem pore domain K+ channel |
| nr | gi|743871135|ref|XP_010906215.1| | 6.31E-153 | PREDICTED: two pore potassium channel a [Elaeis guineensis] |
| Swissprot | tr|Q8LBL1|KCO1_ARATH | 2.00E-133 | Two-pore potassium channel 1 |
| trEMBL | tr|I1JJJ2|I1JJJ2_SOYBN | 1.00E-147 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G46930.1} |
| TAIR | AT5G55630 | 6.00E-133 | Outward rectifying potassium channel protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000197 | 861223 | 880556 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006157
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07885.15 | Ion_trans_2 | 241 | 320 | 6.10E-18 |
| PF07885.15 | Ion_trans_2 | 361 | 431 | 1.10E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0071805 | Biological Process | potassium ion transmembrane transport |
| GO:0005267 | Molecular Function | potassium channel activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.130 |
| SRR2545915 | Juvenile tuber | 2.930 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.440 |
| SRR5643514 | five period of Gastrodia elata | 9.990 | |
| SRR5643515 | five period of Gastrodia elata | 9.920 | |
| SRR5643524 | five period of Gastrodia elata | 10.220 | |
| SRR5643525 | five period of Gastrodia elata | 6.470 | |
| SRR5643528 | five period of Gastrodia elata | 4.890 | |
| SRR5643658 | five period of Gastrodia elata | 6.160 | |
| SRR5643659 | five period of Gastrodia elata | 11.760 | |
| SRR5643660 | five period of Gastrodia elata | 11.890 | |
| SRR5643661 | five period of Gastrodia elata | 10.570 | |
| SRR5643662 | five period of Gastrodia elata | 17.420 | |
| SRR5643663 | five period of Gastrodia elata | 19.190 | |
| SRR5643664 | five period of Gastrodia elata | 17.400 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.250 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.890 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.750 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.750 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.23 |
| Juven | Juvenile tuber | 9.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.06 | |
| Mother_Juven | Mother tuber of Juvenile | 3.87 |