Detail information of GWHGAAEX006160/evm.TU.scaffold_178.39
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0869 | 6.00E-69 | CCAAT-binding factor, subunit A (HAP3) |
| nr | gi|695021361|ref|XP_009397767.1| | 3.68E-77 | PREDICTED: nuclear transcription factor Y subunit B-3-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O23310|NFYB3_ARATH | 2.00E-69 | Nuclear transcription factor Y subunit B-3 |
| trEMBL | tr|M0SSP7|M0SSP7_MUSAM | 1.00E-73 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P27850_001} |
| TAIR | AT4G14540 | 6.00E-69 | nuclear factor Y, subunit B3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000197 | 937814 | 939832 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006160
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module14 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00808.22 | CBFD_NFYB_HMF | 31 | 95 | 7.20E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YB |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08065 | NFYB | Antigen processing and presentation | map04612 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.390 |
| SRR2545915 | Juvenile tuber | 2.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.450 |
| SRR5643514 | five period of Gastrodia elata | 1.190 | |
| SRR5643515 | five period of Gastrodia elata | 0.810 | |
| SRR5643524 | five period of Gastrodia elata | 0.540 | |
| SRR5643525 | five period of Gastrodia elata | 1.770 | |
| SRR5643528 | five period of Gastrodia elata | 5.200 | |
| SRR5643658 | five period of Gastrodia elata | 0.220 | |
| SRR5643659 | five period of Gastrodia elata | 1.480 | |
| SRR5643660 | five period of Gastrodia elata | 1.360 | |
| SRR5643661 | five period of Gastrodia elata | 2.500 | |
| SRR5643662 | five period of Gastrodia elata | 2.910 | |
| SRR5643663 | five period of Gastrodia elata | 0.940 | |
| SRR5643664 | five period of Gastrodia elata | 2.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.530 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.760 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.51 |
| Juven | Juvenile tuber | 4.34 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.23 | |
| Mother_Juven | Mother tuber of Juvenile | 0.73 |