Detail information of GWHGAAEX006161/evm.TU.scaffold_178.40


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|374307804|ref|YP_005054235.1|4.00E-33TIM-barrel protein, NifR3 family [Filifactor alocis ATCC 35896]
KOGKOG23344.00E-165tRNA-dihydrouridine synthase
nrgi|643718094|gb|KDP29450.1|0hypothetical protein JCGZ_18371 [Jatropha curcas]
Swissprottr|Q9T0J6|DUS3L_ARATH2.00E-23tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
trEMBLtr|A0A067KB11|A0A067KB11_JATCU0tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}
TAIRAT3G496404.00E-165Aldolase-type TIM barrel family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000197955203992254+
Transcript Sequence

Network for GWHGAAEX006161

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01207.16Dus82822.50E-55
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0008033Biological ProcesstRNA processing
GO:0050660Molecular Functionflavin adenine dinucleotide binding
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.210
SRR2545915Juvenile tuber17.600
SRP108465SRR5643513five period of Gastrodia elata13.420
SRR5643514five period of Gastrodia elata14.530
SRR5643515five period of Gastrodia elata11.000
SRR5643524five period of Gastrodia elata14.690
SRR5643525five period of Gastrodia elata12.820
SRR5643528five period of Gastrodia elata8.730
SRR5643658five period of Gastrodia elata13.220
SRR5643659five period of Gastrodia elata15.350
SRR5643660five period of Gastrodia elata18.630
SRR5643661five period of Gastrodia elata17.400
SRR5643662five period of Gastrodia elata14.970
SRR5643663five period of Gastrodia elata20.480
SRR5643664five period of Gastrodia elata18.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.650
SRR6049655Rhizomagastrodiae_C368-T10_good_19.860
SRR6049656Rhizomagastrodiae_C368-T07_good_114.130
SRR6049657Rhizomagastrodiae_C368-T07_good_114.660
SRR6049658Rhizomagastrodiae_C368-T04_good_111.110
SRR6049659Rhizomagastrodiae_C368-T04_good_113.210
SRR6049660Rhizomagastrodiae_C368-T01_good_113.760
SRR6049661Rhizomagastrodiae_C368-T04_good_111.570
SRR6049662Rhizomagastrodiae_C368-T01_good_113.000
SRR6049663Rhizomagastrodiae_C368-T01_good_112.820
SRR6049664Rhizomagastrodiae_C368-T10_good_111.870
SRR6049665Rhizomagastrodiae_C368-T10_good_111.870
SRP279888GastroGastrodia elata tuber 15.33
JuvenJuvenile tuber14.06
Mother_GastroMother tuber of Gastrodia elata 12.27
Mother_JuvenMother tuber of Juvenile 10.34