Gene detail

Detail information of GWHGAAEX006174/evm.TU.scaffold_178.55

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672107084\|ref\|XP_008793209.1\|	2.26E-71	PREDICTED: uncharacterized protein LOC103709454 isoform X2 [Phoenix dactylifera]
trEMBL	tr\|B9RE18\|B9RE18_RICCO	5.00E-43	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF50626.1}
TAIR	AT2G46300	9.00E-22	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000197	1240887	1259287	+

Transcript Sequence
>GWHTAAEX006174 AATAATATTCTAATTTCTGAACACTAAATATAACCTAAATGGCCATAAACATAAAAATAGTATAAAAGTATAAATCATCCACATTTTTTAAACATCAAAGAAAAATATAAAAACCAAAGATATAGTGCAAAACTCTATTAAAATTGTAGAGATAAGTCAAAACAAAGACTGAAAAAACAAAAAAACTTCAAATTCATATATTTTTATCAATAACATTGAGTTCTCTGAGAGGTTTATCTCTCAAGGCATAATATATGTTTGTAGCATCTAAGTACAGTATCCAGCCTAAAAGGAGAACTGTCCAATCTCAAGAGCCCATGAATGATTGGATTTTCTCATCATTCAATATAGTTTCATAAAATTATACAAAAGATAAAAATAAGAAAATAAACTGCAAATGTGCTAAAATTTTTCCCAAAACAAAAAAAGACAATTACTGCACTAGAGCATGGATGTTCATATTTTTTTTTGGATTATATCATGGATATTCAAAATTATTGGTTGTTTAGTATTCTAAAAACTATAGTCCATGGATGTTCAAAATTAAGAAACATTTATTTTTTAAAATTAAAATTCAAGCTTGGTAATTTATTATATTTATTAAAATATTAATTTATGCTTTTAAACCTTTTCACTTGTTCAAGGTTATTCAAGTTATGTTTATAGTGGCAAGAATGTAAAAAAATTAACATTTAATAAATGAAGAATTAGATAAATATCACCAGTTGAATGCTGGTTGCATCTCTATAGTTGTTATAAATTAGATTAACAAAGCAGGTAGATATCAGAGTATAAGTATAGCCCTTACTAATAAAATATGACTGCATTAGTTAGTAGTAGGTTATATAAACACAATATCTTTTATAATTTTCTATAAAACACACAATAGACGACACAATAGAATAGCAGACATTGCACGCAAAGTAGATAGGTGTTTAATTGCAGATACTAGACACAATAGACAATAAGCACAACTAGATACAACACAACTGAGATAATAATTTATAACCCTGCACTCTGCATTCCAAAATAAAAAAACTAGTCTACAAATCTACAAGTATTTCTGCAGCAAATACACAACTCAACTAATAACTGTGCAATGTAGCACAGTTGGATAGTAGAGCTTAATAAAACATAATGTTATCCACATCAATATCATCATTTTGAGACTCTTCATCGAATGAAGTAACAGATTGCCTATTAAGATTGTGACCAATAGATTATGATGCTAACAAGTACAAGTAATAATGTACAACTAAAGTTGGGAGTTAAAAGTTATTCAAAGTTAACATGCAAATTACAAAATTAAAAAAGATGCATATAATTTACCATTAAAAATCTAAAGTGTGAACTATTCTTTGCTTCAAGGAACTACAATATGAATTAATAATTTTCTTTCCAATGCTAAAACTTGATTCAGATGCAACTATAAAAATTAAAATAGCGAACAAATATCTTGCCAATGCAAAAAGCATAGGATACTCAACTGAACTTTTATTCCAAAAATCTAAAATATTTATTTAGATATTTACATTATAAGATGGTTCCTTCAAATATAAACCTAGCTCAGACATGGCTTCTTGGGATTTAATTTTATTACTTTGACTTGTGTTGTAATCATCAAATGCATTATTATCATTCTTATTGAACAAATAGCTTCTGTATCACACCGCTTTTTAGAAAAATATGCTATGATGTTACATTTGCATTCTTTATTCTTAATAAACAATTAATAAAATATTTATTATAGTAAAGTCATTAGATTTATTAAAAATATTTATTATAGCAATAATCTATAGATTTTATCCTACACAAAGGGTCAAATATTGCTGCAAATGTTAAGAATAACTTAACCCCAATATTTATTAAAGAGTTGTTAATCAAGTGGGTGCTACAAGTTTGAGTCATCAAGGCTTAGCCCTTCTAGATTTGCTCAATCCAACAACCTCAATGGACCAAGGTTCAATGCAAACTTATTTAATCCATCTCAAATTTCAGTGGTTGAGGAGGTCACATGAAGATCACAATGGTAGTTTTCTTTAGGGGCATGAGGCCCAAAAACCATAGTCTAGCAGAGAAGGAGAAAGGGGAGGAGAGGAAGAGGGGAATAATATTAAGATCAGGAGAGTATGATCGATTATGAGCTACCTAAGGAGGAAGAGGAGGAGAATTTTCTTCAATTGTTTGCAGCGAGTTGGATGGATCTTTAGGTGGAACTGAAATAAAATACACCTTCCTGACAGTATTGGATTGTTGGGGTTTCCTTAATCTGCTACGCCCTCTTACCCTTGAGTTATCATTATCATTTGAATGGGTACTACTTTGGCAGCCCATAAGAGTGAAAGCATAACACGAAGAACATACCTGGAGAAGCTAATCATAGATAACCATTCTATATTGACAGTGAGGTCGTCAGTCATCAGGGAAACCTGACGGCACTAGCTACTTTTGATAAGCCTGAATCAGTCCAGAGCTGCAGTAGTGGATCAGAAGAATGCAATGGCAAAAGGAAGAAAATATTTGGCTCACCTTGAAGAATAAGATTCGCATCATCTTCGAAATGGAGTTCAAGAAGATAACATCCACCAGACAATGTGAAAAGAGACGATGAACCAAATCGTGCATTATACGCATGCTTTCTACCCATCGATAAACCAACGATGCAATGCTTCCATAGCTGCTCTCCTTTAGAAAGATTCTCATCAGATGATATCAGCAAAAAGGGGAGAATAAGAGAGAGAGTGAACGTCTAGTCACTTTGAACAGAGTTGAAGAGACCCTTGTCAAGAGCGAAGCCCAATCTAAGGGAAGATGCTAGAGGGAGAGGATTGGAGAGGGAAGGCCCGAGAACCCCATTAGAAGAGGAGGAAACCTCCCCCGGCGAGGATCCCATGTGAAACCCTAAATCGCTCCCAGGAGGTAAGTACCCTTTTATCTGTTTTTTCTTCTAACTTCTCTTTATTAAATTTTTATTTGTTTTGGAAATATTTTTAGGTACAAAATATTATCATTATCATGTATGGGACACCGACAGCCCATTACGTATTGCCACGTCATCGACACACACAACACACAGAGCGATGGGCGTGCAGCCAGGCCCATTTATGTCCGCTGCACCTTACGCTAACACATCCCGACATCCTCCCAGCTTCCGCTCTCCCTCTCCCCAACTCTCTCCCTACACCGCGACAACTTCTTCACATATCCTCTTTTTTTTAGCCCTACACTTTCAACATCCACCCGTCGATTGTGCCTATCATCGACCGCCGATTCCTAACATCCAACGGCACCCAGCTGATGTACTGCTCCCCCCAAACTGAACCCGCGAGACACCACACACTCATCTCCTCCGTCTCGCCCCTCCTTCCCTTCTCTGCTCTATCTCTTTCCCTCGATCCATCCCAAAATATTCACTTCCATTTTCCCCCGTTTCCCTGTCGCCTTCTTCTTCCGAGAATACCAAATTCGCAGAGAGTGTGTGATCGATAGTGTGAGAACGAGGGAGGGAGGGGGCAAATGGGGGAGGCAGTGAAACCAGTGCTGCAAAAGCCGCCAGGCTACAGAGACCTATCCGTTCCGGCTGCGGCAGTGAGGCCACCGCCCAAGAATCCGCAACTTCCGCCGGCGTTTCAGAACGCGGGAAAACCTTCCAGGAGACGTCGCAGCGGCCGATCCTGCTGTTGCCGTCTTTGTTGCTGCCTCATCGTCCTCCTCATTGTCATCGTCGCACTCTCCGCTTCCGCCGCCGGTTTCACCTACCTCTGGTTCCGGCCTCACCTCCCTACATTCCGAATCGAGAATGTGACGGTTCCCGTCTTCAGAATAACGTCGAGATCGGACGCCACGTTCCTTGATGCAACAGCAACGGTTAAGATCCTGGCGGCAAACCCTAACAAGAAACTAGGGCTGTCGTTCCGGGATGCAGAAGGGAGAGTCGCGCTGGCGGATGAGGACGGGGAGGTGGATTTGGGCGTGGGATCGGCGGCAGGATTTGAGTTGGAGAGAAAGAACTCAACAGCGGTTAGGATTACGGCGGTGGCGAAGGGAGTGATGGTTGATGACTCTGTTGGGGCGAGGCTGAAGGCTAGGTTCAAGAGCAAGAAGATCGGGTTTATGATGGAAATGAGATCTACGTTGGGATTTATTGTTGATGGCAAACCTACGCCCAAGTTCCCGATTCGAGTGAAGTGTGGGTCTGTGACCCTGAAGCAGATTGGGAGCGCGCGGCCGCAACTAAAATGTGATATCAAGTTCTTCAATGGCTTATTTTAAACTGAAGCCGTAGAAGGTGGAATTAATAATGGTGGACATACAACCAGTCATATAATAAGAAGCATTGTCGATCTTCCTTCATTTTCATCAGATATTGCGTATCTACATTAGGCACCGCCTTCTCCGGCCAGCACTGTGGATCTTTGATTTGTACTCTTCTAGTTTTGCAATTTGTTTGTTGATAACTTGTAACTTGCCACACTTTTCCTTATGATTGAAATTGCTTAAATATAACTACACATATTAGTAAAGTATCATTCTAGCATAGAAATCATCATCCCTTTGTTGAAGATGTTAGGGAAATAATATTTGACGTACCAATGCTTTGCTTGATTATGATCTTTGAAAATTTTCTTGCCACATCACAACAAAAAATAGTCCATAACTTTTGTAAAATTTTTGTAGGCAATCCAATTATAATTTTTAATTTACTCTATAATTGAATGTAATGTTAGTAAAGGTTGATCATATTATTGTATACATCATTCAAAATCAAATGTTATCACCTGTGATTGCGTCGGTAAATTCAGAGAATGCTATTGCCTTTATATATAGTTATGTTCTAGGTTTTGAAGCTATCACCAAAATGATGTAATCTCTCTCAAATAAAATATTAGGAAGGCAGTTCAACTTTTTGTATTTATCATGATGCTAATGAACATTCCACAATAAGTTGCCATTCTTTGAGATCATTTTTGGATAAATCAGGGTTAACTAAAAGAGTTTATTATGTAAGGGAAAAAAAGTGTTGGAAAACTATGAGCGGTGACATTGGAAGAAACCTTGACTCAACACAAGGAAGCAGATAATGTGAATGATGCATGTTATTTTGTTGAAGATGAAGTAAAAAAAGTAGACTCCCTAAAAACCCCCAAACTCCGGCCCTAAGTTGTAAAGGAGTCTGAGTCAAATTAGGAAAATTTATTGGGCTTAATATGAATTATGAGTAAACTTTTTTACTCGTTTTTTAATTTGACTCTGACTCCTTTGCAACCTGTTGGCCAGAGTTTGGGTGTCTACTTTTGGATTAATAAGGTATATAAATTATGTTTTTAATCTTAATTAATGCTTACTTAATAAATGTTAAACAACAAATAATTTAGCTACCTAAATAAGTTATTTACTCAATAATAATAACTAA

Network for GWHGAAEX006174

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.220
SRP064423	SRR2545915	Juvenile tuber	7.310
SRP108465	SRR5643513	five period of Gastrodia elata	4.600
	SRR5643514	five period of Gastrodia elata	5.370
	SRR5643515	five period of Gastrodia elata	5.450
	SRR5643524	five period of Gastrodia elata	4.780
	SRR5643525	five period of Gastrodia elata	4.230
	SRR5643528	five period of Gastrodia elata	3.270
	SRR5643658	five period of Gastrodia elata	4.030
	SRR5643659	five period of Gastrodia elata	5.560
	SRR5643660	five period of Gastrodia elata	6.700
	SRR5643661	five period of Gastrodia elata	6.510
	SRR5643662	five period of Gastrodia elata	4.770
	SRR5643663	five period of Gastrodia elata	5.810
	SRR5643664	five period of Gastrodia elata	5.850
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.870
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.110
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.690
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.660
SRP279888	Gastro	Gastrodia elata tuber	7.45
	Juven	Juvenile tuber	9.28
	Mother_Gastro	Mother tuber of Gastrodia elata	4.19
	Mother_Juven	Mother tuber of Juvenile	5.63