Detail information of GWHGAAEX006177/evm.TU.scaffold_178.57
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|695043476|ref|XP_009409432.1| | 5.97E-50 | PREDICTED: ethylene-responsive transcription factor CRF2-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O82503|CRF1_ARATH | 1.00E-31 | Ethylene-responsive transcription factor CRF1 |
| trEMBL | tr|M0TXN5|M0TXN5_MUSAM | 2.00E-46 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P05260_001} |
| TAIR | AT4G11140 | 4.00E-31 | cytokinin response factor 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000197 | 1261259 | 1262053 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006177
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 92 | 141 | 1.30E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.450 |
| SRR2545915 | Juvenile tuber | 0.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.910 |
| SRR5643514 | five period of Gastrodia elata | 2.940 | |
| SRR5643515 | five period of Gastrodia elata | 4.780 | |
| SRR5643524 | five period of Gastrodia elata | 2.720 | |
| SRR5643525 | five period of Gastrodia elata | 4.570 | |
| SRR5643528 | five period of Gastrodia elata | 1.860 | |
| SRR5643658 | five period of Gastrodia elata | 2.800 | |
| SRR5643659 | five period of Gastrodia elata | 4.080 | |
| SRR5643660 | five period of Gastrodia elata | 3.050 | |
| SRR5643661 | five period of Gastrodia elata | 3.320 | |
| SRR5643662 | five period of Gastrodia elata | 3.400 | |
| SRR5643663 | five period of Gastrodia elata | 4.410 | |
| SRR5643664 | five period of Gastrodia elata | 5.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.680 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.690 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.270 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.350 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.63 |
| Juven | Juvenile tuber | 20.24 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.91 | |
| Mother_Juven | Mother tuber of Juvenile | 13.59 |