Detail information of GWHGAAEX006189/evm.TU.scaffold_178.72


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG18136.00E-142Predicted E3 ubiquitin ligase
nrgi|743800068|ref|XP_010925741.1|4.52E-154PREDICTED: zinc finger CCCH domain-containing protein 15 isoform X2 [Elaeis guineensis]
Swissprottr|Q8GX84|C3H1_ARATH1.00E-142Zinc finger CCCH domain-containing protein 1
trEMBLtr|A0A068UR94|A0A068UR94_COFCA4.00E-154Coffea canephora
TAIRAT1G01350_16.00E-142Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000019715059491520269+
Transcript Sequence

Network for GWHGAAEX006189

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00642.23zf-CCCH1912161.40E-09
PF13920.5zf-C3HC4_32653076.20E-07
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.460
SRR2545915Juvenile tuber21.520
SRP108465SRR5643513five period of Gastrodia elata15.590
SRR5643514five period of Gastrodia elata13.510
SRR5643515five period of Gastrodia elata15.500
SRR5643524five period of Gastrodia elata15.310
SRR5643525five period of Gastrodia elata21.840
SRR5643528five period of Gastrodia elata18.480
SRR5643658five period of Gastrodia elata21.150
SRR5643659five period of Gastrodia elata20.060
SRR5643660five period of Gastrodia elata20.310
SRR5643661five period of Gastrodia elata20.890
SRR5643662five period of Gastrodia elata15.830
SRR5643663five period of Gastrodia elata17.950
SRR5643664five period of Gastrodia elata17.040
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.320
SRR6049655Rhizomagastrodiae_C368-T10_good_116.360
SRR6049656Rhizomagastrodiae_C368-T07_good_112.630
SRR6049657Rhizomagastrodiae_C368-T07_good_111.960
SRR6049658Rhizomagastrodiae_C368-T04_good_110.440
SRR6049659Rhizomagastrodiae_C368-T04_good_18.470
SRR6049660Rhizomagastrodiae_C368-T01_good_110.190
SRR6049661Rhizomagastrodiae_C368-T04_good_110.660
SRR6049662Rhizomagastrodiae_C368-T01_good_19.860
SRR6049663Rhizomagastrodiae_C368-T01_good_111.060
SRR6049664Rhizomagastrodiae_C368-T10_good_116.830
SRR6049665Rhizomagastrodiae_C368-T10_good_116.830
SRP279888GastroGastrodia elata tuber 17.80
JuvenJuvenile tuber20.61
Mother_GastroMother tuber of Gastrodia elata 11.18
Mother_JuvenMother tuber of Juvenile 13.13