Detail information of GWHGAAEX006195/evm.TU.scaffold_178.77


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG27522.00E-135Uncharacterized conserved protein, contains N-recognin-type Zn-finger
nrgi|672106979|ref|XP_008787990.1|0PREDICTED: putative E3 ubiquitin-protein ligase UBR7 isoform X2 [Phoenix dactylifera]
trEMBLtr|W9QJX7|W9QJX7_9ROSA0Putative E3 ubiquitin-protein ligase {ECO:0000313|EMBL:EXB28669.1}
TAIRAT4G238602.00E-135PHD finger protein-related

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000019716317781662350+
Transcript Sequence

Network for GWHGAAEX006195

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02207.19zf-UBR411052.10E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBR-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms193.570
SRR2545915Juvenile tuber146.740
SRP108465SRR5643513five period of Gastrodia elata28.200
SRR5643514five period of Gastrodia elata27.350
SRR5643515five period of Gastrodia elata25.390
SRR5643524five period of Gastrodia elata24.270
SRR5643525five period of Gastrodia elata24.600
SRR5643528five period of Gastrodia elata25.600
SRR5643658five period of Gastrodia elata43.580
SRR5643659five period of Gastrodia elata45.520
SRR5643660five period of Gastrodia elata67.140
SRR5643661five period of Gastrodia elata50.510
SRR5643662five period of Gastrodia elata62.520
SRR5643663five period of Gastrodia elata57.710
SRR5643664five period of Gastrodia elata78.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_141.950
SRR6049655Rhizomagastrodiae_C368-T10_good_140.410
SRR6049656Rhizomagastrodiae_C368-T07_good_141.400
SRR6049657Rhizomagastrodiae_C368-T07_good_153.350
SRR6049658Rhizomagastrodiae_C368-T04_good_145.140
SRR6049659Rhizomagastrodiae_C368-T04_good_161.730
SRR6049660Rhizomagastrodiae_C368-T01_good_152.340
SRR6049661Rhizomagastrodiae_C368-T04_good_152.900
SRR6049662Rhizomagastrodiae_C368-T01_good_135.070
SRR6049663Rhizomagastrodiae_C368-T01_good_136.540
SRR6049664Rhizomagastrodiae_C368-T10_good_137.800
SRR6049665Rhizomagastrodiae_C368-T10_good_137.800
SRP279888GastroGastrodia elata tuber 52.64
JuvenJuvenile tuber50.43
Mother_GastroMother tuber of Gastrodia elata 16.55
Mother_JuvenMother tuber of Juvenile 25.17