Gene detail

Detail information of GWHGAAEX006200/evm.TU.scaffold_178.84

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1943	Beta-tubulin folding cofactor D
nr	gi\|743778030\|ref\|XP_010919463.1\|	PREDICTED: tubulin-folding cofactor D isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8L5R3\|TBCD_ARATH	Tubulin-folding cofactor D
trEMBL	tr\|M0RP53\|M0RP53_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P03730_001}
TAIR	AT3G60740	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000197	1712390	1816828	+

Transcript Sequence
>GWHTAAEX006200 GGAATTAATATCAGCAGCCGAGTAGGTTACAAATAAAAGGCTGAGATTAAGCATACAATAGAGGCGAAGCCAGTATCTCATAAGATTGTATTTCTCCTTCACCTTTTAAAAATAAAATACGTTATTATTTACCAGTAATTGATTTTTTTGGGATAAATAGTAACAAATATTAGCACGATGTCTTCGTTCTCGCGCTCGACGGCATATCCCGCAATACTGGAAGAAGGAGCGCCGGCCGACATGGAAACTCCCACCAACGACACTGTAGCATTGTCGACCCCGTTGGATGAGCACGACACCAAGGAGGGAGTTCTGCTACGCTATTTTCTTCAGGAATGGACGCTTGTCAAGTCTATCCTCAACCGGATCATCGTCAGCGGCGGCGTCACCAGTTTCTCTGACGTCAATAAGATCCGTTCCATAATTGACAAGTATCAAGAGCAGGGGCAGCTTCTAGAACCTTACCTGGAGAGCATTGTGAACCCACTTATGTCGTTAGTGCACTCCAAGGCAATGCAGCTGAGGGCTGACACTGATGAAGCTTTTGATATCATAAAGCGTATATGCATTATTATATATTCACTGGTTACTGTTTGTGGGTACAAAAGTGTTATTCGGTTTTTTCCACATCAAGTTTCTGATTTTGAGATTGCTGTAACACTTTTGGAGAAGTGCCATAATGCAAAATCGCTTACATCTTTAAGGCAAGAAAGTACTGGAGAAATGGAGACAAAGTGCATAACTCTCTTATGGCTTTACATACTTGTTTTGATTCCTTTTGATATTTCATCTGTGGACTCTAGTATTGCAAGTACTAATCAATCGGGAGAATGTGAGCTATCACCTTTGGTCTACAAATTACTTGAAATTTCAAAGGATCATTTATCAAGTTCTGGTCCCATGCAAAGGTTCTCAGGACTTGTACTGTCAAGGCTTCTAACCCGTCCAGATATGCCAATGGCTTTTGTAAGATTCATTGAATGGACAGCTGATTTTTTCCTATCTTGTACTGATGATGATGTCAATCAGTTCAAATTGCTTGGCATTGTTAAAGCTCTGGCTTCAATTTTCAAGGTTGGTGTCCGGAAAGTTCTGCTTGAAGTGGTTGATAAAACTTGGATTAATGTTTCCAGCTTAATGAAGTCTGCTGTGGCGGCTCGTAATCCTTTGCTTCGAAAATATATTATCAAATTATCACAGCGCATTGGAATTACATGTTTACCCCATTGTCGCATGTCATGGCGCTATATGGCAAAGACTAGCTCTCTGGGACAACATCTTTTTCTAAATGCTACTGAAAGAAATTCTTGTAGCAATGGTCAGCTGGTTGTTCATCTTAGTGACTGTTCAAATGCAGAAATTCTTGAAGAAGACAATATTGATGTTCCAGAAATTGTAGAAGAGATAATTGAATTGCTATTGTCAGGTTTGAGAGATCCGGTCACAGTTGTTAGATGGTCTGCTGCAAAAGGCATTGGCCGAATAACAGCATGCTTAACTTCTTCCCTTGCAAAGGAGGTGCTGTCTTCTTTGTTAGATTTGTTTTGTTCGGGCGAGGGAGATGGATCATGGCATGGAGGTTGCTTGGCTTTAGCAGAATTAGCTCGAAGAGGTTTATTATTGCCAGAGAGTTTTTCTAAAGTAGTACCTTCAATAATAAAGGCATTGCATTATGATATCAGAAGAGGTCCACATAGCATTGGTTCACATGTACGGGATGCTGCTGCATATGTTTGCTGGGCATTTGGTCGGGCATACCACTACTCTGATATGAAGGGTATTATAGAGCAGCTTACCCCACACCTTCTTACTGTTGCTTGTTATGACCGTGAGGTTAACTGTAGAAGAGCAGCTTCTGCTGCTTTTCAAGAAAATATTGGGAGACAGGGTGACTTTCCTCATGGCATAGAAATTGTCAGTTCAGCGGACTATTTTTCTCTCGCCTCTCGAGTTAATTCTTACCTTAATGTTGCGGTTAGCATTGGACAGTATAAGGAATATCTATGTGCTTTTGCTGAAGAGTTACTACACTTCAAAATATTCCATTGGGATAGAAGTTTGAGAGAACTTGCTGCACAGGCAATATCTGCTCTCGCAAAATATGACCCAGAGTATTTTGCTGGATATGTCCTTGAGAGATTGATTCCATTGACTCTTTCTGTGGATCTTTTTGTGCGCCATGGTGCAACATTAGCTGCTGGAGAACTTGTATTGGCTTTGCATGAATGTAACTTCAATTTTCCAGTAGAAAAGCAGCAAAAGGTTGCAGGAATTGTTCCTGCTATTGAAAAAGCTCGCCTCTATCGGGGAAAGGGAGGAGAAATTATGCGTTCTGCTGTATCTCGGTTCATCAATTGCATCTCTTATTCAAGGATATCCTTAAATGATAAAACTAAGAATATTTTACTTGATACTTTGACTGACAACTTAAAGCACCCTAATGCACAGATACAGTGTGCTGCTGTTGATGCACTAGGGAATTTTATTCGGGCTTATCTCGTTTCTTTCGATAAAAAGGTTCCCGATGTGATAATTTCAAAGTACCTAGAACTTCTAGATGATCCTAATGCTGCTGCAAGAAGAGGTGCTGCATTAGGTTTTGGTAAATTGCCTCATGAATTTCTGTGTACCAGGTGGAGAGATATTTTGAGAAGACTCTGCAAATCTTGTCTGCTTCAGGATAAGCCTGATGATCCGGATGCAGAGGCACGTGTTAATGCTGTAAAAGGGCTGGTTTCTGTGTGTGAAATACTAACTGGGGCTTCTACTGATAAAAGTTCAGAAGAAAGCCATATTTATTTTTTCATCAAGAATGATGTGATGAATACTCTTTTTGATGCGCTGGATGACTATGCTGTCGACAATAGAGGAGATGTGGGATCTTGGGTTCGGGAAGCTGCCTTGGATGCACTTGAGAGGTGTACATACATCCTTTGTAAGCATGATTCTGATAGTGCGACAAAGGGACCGTGTTTTACCTATACATCTGAGTCTGATGGCAATGATTTGGTCTCCTCCGATCACTTTTGTTCTTTGTTTGATGAAAAAATTGCTACGAACTTAATAAATGGCATTGCAAAACAAGCTGTCGAGAAGATGGACAAAATAAGAGGTTTAGCTGCTAGTATTCTCCAAAGGATAATACATCACCGTAAACATTTTGTCCCGCACGTACCTCACAGGGAAAGACTAGAAGAAATCATTCCCCTTGATACAGACGTTAAATGGAAGGATCCTACAGTGTCCTTTCCAAGATTGGTTCAACTTCTTCAGTTTAGCTGTTATAGCAGATCTGTTCTGTCAGGGTATGTCATCTCTGTAGGTGGATTGCAAGAGTTCTTGAGTAAGGTTTCAAAAGAGGCTCTATTGGAATATATTGAAAGTTCCAAAGGTGATAATATTCAGAAGTTGAGTGACAGAGAAGTTATGCTGAGTACTGATCTTCTTTGGATCCTTCAGAACTATCAGAAGTGCAGCAGAGTTATTTTGCCAACTTTGAAGACAATCGAGATTCTTTTTAGCAGAACGATCTTCTTTAATATGGAGGGCCATACTCAAGTATTCTACACTGCGCTTTTAGATTCACTGGTAGTTGAGTTGAAGGGGACAAAGGATTTTACTAAGTTATGCACAGGCATTTCAATTCTTGGATATGTTGCATCACTTATGGAACCTTTAAATCATCGTGCGCTAACTCAATTGCTTTGTTTTCTTGGCCACAAGTATCCAAAGATACGGAAAGCGGCGGCTGATCAAGTATATCTGGTGATCCTGCAAAACCCTAGTCTTGTTAATAGGAGTGAAGAAGACAAAGCGGAGAGATGTCTGGAAATTCTGGCAGAGACCAGCTGGGACGACTCTTTTCAGGATGCCATGCTCAAACGACAGCAGCTTTTCGAGTTTGCCGGTTTTGAGGAAGGTAGCAGAATTACTACTGTAAAGCCCAGTTCTGGAAGAACATCAAACATTCAACTTGAAAGGCTAAACCAAGCAGCTGGAGTTGATGAAAATATGTCTTATTCCTCCTTGGTTGATTTCACTGGATTTTAGTATGTTATACAAAGTTGATGGTGGAACCACACAAGACTAATACATGATTTTGCAAGAGTCACAGTATTGATGGTTCGATGAGATAAAAATTTTCACTTAATTTTTATTAAACAGTTCATTAAAAAATAAAAATTTAATAAAATGCCTCTTTCGGTGCCCAACACAATTAATACATTTAAATTTAATGTTAAATTCATAATAATTAACATTTAGCAGTTAAATTTATGATTATAAATGTTTTAGAAGAATGTTTCTTAAAAGAGGTTATACTGCTTGCTTTTAAACATTTGTAGAATCTCATTGACTATA

Network for GWHGAAEX006200

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12612.7	TFCD_C	961	1149	2.80E-54

Protein Sequence

>GWHPAAEX006200
MSSFSRSTAYPAILEEGAPADMETPTNDTVALSTPLDEHDTKEGVLLRYFLQEWTLVKSILNRIIVSGGVTSFSDVNKIRSIIDKYQEQGQLLEPYLESIVNPLMSLVHSKAMQLRADTDEAFDIIKRICIIIYSLVTVCGYKSVIRFFPHQVSDFEIAVTLLEKCHNAKSLTSLRQESTGEMETKCITLLWLYILVLIPFDISSVDSSIASTNQSGECELSPLVYKLLEISKDHLSSSGPMQRFSGLVLSRLLTRPDMPMAFVRFIEWTADFFLSCTDDDVNQFKLLGIVKALASIFKVGVRKVLLEVVDKTWINVSSLMKSAVAARNPLLRKYIIKLSQRIGITCLPHCRMSWRYMAKTSSLGQHLFLNATERNSCSNGQLVVHLSDCSNAEILEEDNIDVPEIVEEIIELLLSGLRDPVTVVRWSAAKGIGRITACLTSSLAKEVLSSLLDLFCSGEGDGSWHGGCLALAELARRGLLLPESFSKVVPSIIKALHYDIRRGPHSIGSHVRDAAAYVCWAFGRAYHYSDMKGIIEQLTPHLLTVACYDREVNCRRAASAAFQENIGRQGDFPHGIEIVSSADYFSLASRVNSYLNVAVSIGQYKEYLCAFAEELLHFKIFHWDRSLRELAAQAISALAKYDPEYFAGYVLERLIPLTLSVDLFVRHGATLAAGELVLALHECNFNFPVEKQQKVAGIVPAIEKARLYRGKGGEIMRSAVSRFINCISYSRISLNDKTKNILLDTLTDNLKHPNAQIQCAAVDALGNFIRAYLVSFDKKVPDVIISKYLELLDDPNAAARRGAALGFGKLPHEFLCTRWRDILRRLCKSCLLQDKPDDPDAEARVNAVKGLVSVCEILTGASTDKSSEESHIYFFIKNDVMNTLFDALDDYAVDNRGDVGSWVREAALDALERCTYILCKHDSDSATKGPCFTYTSESDGNDLVSSDHFCSLFDEKIATNLINGIAKQAVEKMDKIRGLAASILQRIIHHRKHFVPHVPHRERLEEIIPLDTDVKWKDPTVSFPRLVQLLQFSCYSRSVLSGYVISVGGLQEFLSKVSKEALLEYIESSKGDNIQKLSDREVMLSTDLLWILQNYQKCSRVILPTLKTIEILFSRTIFFNMEGHTQVFYTALLDSLVVELKGTKDFTKLCTGISILGYVASLMEPLNHRALTQLLCFLGHKYPKIRKAAADQVYLVILQNPSLVNRSEEDKAERCLEILAETSWDDSFQDAMLKRQQLFEFAGFEEGSRITTVKPSSGRTSNIQLERLNQAAGVDENMSYSSLVDFTGF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	38.300
SRP064423	SRR2545915	Juvenile tuber	33.380
SRP108465	SRR5643513	five period of Gastrodia elata	11.070
	SRR5643514	five period of Gastrodia elata	11.550
	SRR5643515	five period of Gastrodia elata	11.100
	SRR5643524	five period of Gastrodia elata	12.190
	SRR5643525	five period of Gastrodia elata	7.350
	SRR5643528	five period of Gastrodia elata	5.300
	SRR5643658	five period of Gastrodia elata	7.450
	SRR5643659	five period of Gastrodia elata	11.290
	SRR5643660	five period of Gastrodia elata	10.660
	SRR5643661	five period of Gastrodia elata	9.060
	SRR5643662	five period of Gastrodia elata	11.260
	SRR5643663	five period of Gastrodia elata	13.600
	SRR5643664	five period of Gastrodia elata	12.590
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.220
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.810
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.600
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.470
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.520
SRP279888	Gastro	Gastrodia elata tuber	10.21
	Juven	Juvenile tuber	15.56
	Mother_Gastro	Mother tuber of Gastrodia elata	7.74
	Mother_Juven	Mother tuber of Juvenile	12.95