Detail information of GWHGAAEX006205/evm.TU.scaffold_178.89
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|695037514|ref|XP_009406251.1| | 9.36E-92 | PREDICTED: transcription factor RF2a-like isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q5JMK6|BZP06_ORYSJ | 7.00E-79 | Basic leucine zipper 6 |
| trEMBL | tr|A0A077RY47|A0A077RY47_WHEAT | 1.00E-84 | Chromosome 3B, genomic scaffold, cultivar Chinese Spring {ECO:0000313|EMBL:CDM82260.1} |
| TAIR | AT3G58120 | 3.00E-73 | Basic-leucine zipper (bZIP) transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000197 | 1833285 | 1835554 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006205
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00170.20 | bZIP_1 | 131 | 179 | 2.20E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.910 |
| SRR2545915 | Juvenile tuber | 4.840 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.270 |
| SRR5643514 | five period of Gastrodia elata | 5.610 | |
| SRR5643515 | five period of Gastrodia elata | 4.130 | |
| SRR5643524 | five period of Gastrodia elata | 1.410 | |
| SRR5643525 | five period of Gastrodia elata | 7.450 | |
| SRR5643528 | five period of Gastrodia elata | 3.850 | |
| SRR5643658 | five period of Gastrodia elata | 4.820 | |
| SRR5643659 | five period of Gastrodia elata | 2.280 | |
| SRR5643660 | five period of Gastrodia elata | 1.820 | |
| SRR5643661 | five period of Gastrodia elata | 1.850 | |
| SRR5643662 | five period of Gastrodia elata | 1.460 | |
| SRR5643663 | five period of Gastrodia elata | 5.250 | |
| SRR5643664 | five period of Gastrodia elata | 1.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.740 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.890 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.690 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.690 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.31 |
| Juven | Juvenile tuber | 8.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.83 | |
| Mother_Juven | Mother tuber of Juvenile | 4.70 |