Detail information of GWHGAAEX006207/evm.TU.scaffold_178.92
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|433655934|ref|YP_007299642.1| | 9.00E-75 | amino acid transporter [Thermoanaerobacterium thermosaccharolyticum M0795] |
| KOG | KOG1286 | 0 | Amino acid transporters |
| nr | gi|695043425|ref|XP_009409403.1| | 0 | PREDICTED: cationic amino acid transporter 5-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O64759|CAAT5_ARATH | 0 | Cationic amino acid transporter 5 |
| trEMBL | tr|W1PVC0|W1PVC0_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN12038.1} |
| TAIR | AT2G34960 | 0 | cationic amino acid transporter 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000197 | 1896377 | 1905980 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006207
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13520.5 | AA_permease_2 | 76 | 472 | 4.00E-41 |
| PF13906.5 | AA_permease_C | 515 | 564 | 4.00E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006865 | Biological Process | amino acid transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.410 |
| SRR2545915 | Juvenile tuber | 0.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.280 |
| SRR5643514 | five period of Gastrodia elata | 10.670 | |
| SRR5643515 | five period of Gastrodia elata | 4.880 | |
| SRR5643524 | five period of Gastrodia elata | 8.800 | |
| SRR5643525 | five period of Gastrodia elata | 0.160 | |
| SRR5643528 | five period of Gastrodia elata | 0.170 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 3.070 | |
| SRR5643660 | five period of Gastrodia elata | 0.610 | |
| SRR5643661 | five period of Gastrodia elata | 1.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.150 | |
| SRR5643663 | five period of Gastrodia elata | 0.260 | |
| SRR5643664 | five period of Gastrodia elata | 0.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.390 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 31.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.38 |
| Juven | Juvenile tuber | 2.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.30 | |
| Mother_Juven | Mother tuber of Juvenile | 1.56 |