Gene detail

Detail information of GWHGAAEX006209/evm.TU.scaffold_178.94

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1865	Ubiquitin carboxyl-terminal hydrolase
nr	gi\|743770544\|ref\|XP_010915558.1\|	PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Elaeis guineensis]
Swissprot	tr\|Q9FPS9\|UBP15_ARATH	Ubiquitin carboxyl-terminal hydrolase 15
trEMBL	tr\|J3LBA5\|J3LBA5_ORYBR	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB02G19220.1}
TAIR	AT1G17110	ubiquitin-specific protease 15

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000197	1911071	1945027	+

Transcript Sequence
>GWHTAAEX006209 CATTTGGTGTAGATTTGGCATGAGTATGCCGGGTGGACATGCTCAAGCCAAGAGAAGCTGATGTGCCTGCTCTTTTTATGGTTTTGGTTGTGCTGCCTGTTATCATCTACATTATTCTCGGCAAGTGGAATGATACTTCAAAGAAGGCAGCCAAGGTCAACATACTCGCCCAGATAGCAGCTGAAGAGTCTATTAGAGCAGAAGTTATGGCATCTGCTGATGTTTCACAAGCAGTTCCTTTATGGAAGATGGACACTATTAGAGCAGAAGTTATGGCATCTGCTGATGTTTCACCAGAAGTTCCTTTATGGAAAATGGGTACTCATGTGTGTGCTAAATGCTTTGCTCCTGCTACATCTCGCTGTTCCAGATGCAAGTCTGTTGGATACTGCTCTGGGAAATGCCAAATAGTACACTGGAGGCAGGGACATAAGGAAGAGTGCCAACAATGGCAGAAAGGTGGTGCTAATGTTTCTGGTGGTCATGGTCCGATTACTGATTCTAGCCATAGAGGGTCTATGGCAGATGGCTCAAGTGATTTTATTGGAACTTATAGCGAGCTTCAGCCAGAAAACCTTTTCCCTATTAAGTTTGATGGATCTTTATATCGGAGAATAGATGCATCTATTGGTCTACACACAGAAAGGTGTTTCACCGATAATGGCAGGAGAGTTCGAGGTAGACCCAAGAGAGAAATAGTAAGAAGTGATAATGCAAGCATTTCTGCTGGCACCAATAATACTCGTGCTGATGCTCAATTGATGGATGGGAGCTCCACTGACAATTTGCCTCAGAATGCTTTGTTTGAGATTGAGTTGGGACCTAGGAATTTTACTGAAACAAATGAACGCCACAAATATGATAGCACGGGCATTCAGAATTTTGCCAATATATCTACTGTCAGAAATTTTGCATCTCTGCCTCAGAAGTTAAAGGATGAAGGCAAGTGCATGCAAAAGCCGAGTAACTCCACTAACTTTCCAGAGAAGGCATTGGATGAACTCCAGAAATCAACTGGGACTTCCACGAGCTCATTCAAACAAAGATGCCTTACTGAGTCTCTTGAAAATGCTGCAGATAAAGGTGAAACAGGAGAAAAGTTCTTTTCAGGTAAAGTTGACCATGAAGATAGATTTCATCTGCCGTTTGCAAAATTGGGTCTGCGGTCCTCAACTGAAGAGAACTCAGTTCAAGGAAACTTAGTTTATAAAAAACCTCCATACATACTGGATCCTGAAAAATCAGCAGCAAGAGCGCCAAGACAATGCGAATCTGAAGTGACCATAAAACAATGCCACATAGAAAATGAATTGAGAACTCCTTCAAATGTTCCCATTAGCAGCCCTGACCAGAGCATCAAAGGAGCAACTAACTTGAAAGAGATGACACTAGAAACATCGAGAAGCTCTTCTAAAATTCACAAGAGTCGACTTGTTGGTTTAATCAATGGCTATAAAAGAAGTAAGATGCTTTTTCCTTATGAAGACGTCGTGAAGCTTTTTCAGTGGGAGATGTCTGGTATATCTCCAAGGGGGCTACTTAATTGTGGAAACAGTTGCTATGCCAATGCTGTTTTGCAATGTCTGACCTTCACAAAGCCTATAATGGTCTACTTACTTCATCGATCACACTCAAGAACCTGTCATATAAAAGATTGGTGCCTGATGTGTGAACTTGAACAGTACATTGCAGAGCTGGTAGAAGGAGGTGGCCCACTGTCTCCCAGTAAAATTCTTATAAACATAAGTGCTGGTTGTAGAATGGGTGGTGGAAACCAGGAAGATGCTCATGAGTTTCTAAGGCTCTTAGTCATGTCTATGCAAGCTGTTTGCCTTTGGGATCTGGGAGGTGAAAAGAAGGTTGATCTAGGCTTGCAGGAAACTACTCTTGTACAACAGATTTTTGGTGGTCGTCTTAAATCCAAGGTAAAGTGCTTGAGATGTCATCATGAGTCTGAACGATATGAAAATATTATGGATCTTACTCTAGAGATCTATGGGTGGGTTGAATCTTTAGAGGATGCTCTCACACAGTTTACTGCCCCAGAGGATTTAGATGGCGAAAATATGTATAGATGTGGAAGGTGCTATGCATATGTTAAGGCAAGAAAGCAGCTGAGTTTGCATGAGGTGCCAAATATCTTGACAATAGTTCTTAAGAGATTCCAGACAGGAAAATATGGAAAAATCAATAAATGTGTTACCTTTCCAGAGTTATTGGACATGATTCCATTTGTAACTGGAACTGCAGATAGCCCTCCTCTTTACACGCTATATGCTGTTATCGTGCATTTGGACACCCTAAATACATCCTTCTCTGGCCATTACGTGTCATATGTCAAAGACATTCAAGGAACATGGTTTCGAATTGATGACTCAGAGGTGCAGGCTGTGCCATTGAGTCAGGTTATGTCTGAAGGTGCATATATGCTGTTTTACTCTAGGTCTTTCCCACGCCCTCCAAGTGTCTATCATATCAATAGAGCACCATCACAACCTCCTTCTCTAAAGCATATTTCACCCAAGTCCCTGAAATCTTTAAGACATGAGCCGCAGCATGAAGGAAACGAAGCTTTGTCTTCACTGCCCTCATGGCCTGGATATAGAGGCAACCTTTCTAATGAGAAATTCAGGAACTGCTGCTTTTCAAGAAACACAGCTTATACTGAAGCAGTCAATGCTGACTTCTCTGATGCTACGTCAAGTGATTGGTCTCTCTTTACAAGCTCAGATGAATCATCTTTCACTGCAGAGAGCACTAGAAACTCGTTCAGCACTGTTGATCATGAAGATTCTACCTCCATTGATCCCATCTCTTCTATCTTCGGTTCCTTTTATATCTCGGAGTGTGCGCAGGGTAATTCTTCTACAAATTCATCGCTCAGAGTGTGACGGGTATTTATCTCAGGTTTTCGTATAACAATTCAGCTACTCGGCGGTGTACATAGGCAAGAAATATCTGCATTTTTGTTCAACTATTTATTATCTAGTTCTGTCTGTTAGAACAAATGGGAGTAATCCCTATATTTATGATTTGTAGCTATTAGCATATGTCCCTACTAACCCCTATGGTTGATCTGAAGTCACAAAGAAGTTGTGCCTCAACTTCTTATTTTAGTTTGAATGAGGCATTTGTAAGAGAGATAGCAGACCCAATCTTTGTAGTAATTAGTTTTTAATGGAAATTCTTAACCTGTTATGAGTTGTGATTGACTAGAGATGCATCAGCTTTTACGGGAACCTTTTCC

Network for GWHGAAEX006209

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01753.17	zf-MYND	98	135	1.30E-09
PF00443.28	UCH	499	800	1.00E-40

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016579	Biological Process	protein deubiquitination
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process
GO:0036459	Molecular Function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.120
SRP064423	SRR2545915	Juvenile tuber	34.070
SRP108465	SRR5643513	five period of Gastrodia elata	27.270
	SRR5643514	five period of Gastrodia elata	41.740
	SRR5643515	five period of Gastrodia elata	36.140
	SRR5643524	five period of Gastrodia elata	39.380
	SRR5643525	five period of Gastrodia elata	27.430
	SRR5643528	five period of Gastrodia elata	19.060
	SRR5643658	five period of Gastrodia elata	25.540
	SRR5643659	five period of Gastrodia elata	25.340
	SRR5643660	five period of Gastrodia elata	25.540
	SRR5643661	five period of Gastrodia elata	22.600
	SRR5643662	five period of Gastrodia elata	20.870
	SRR5643663	five period of Gastrodia elata	27.980
	SRR5643664	five period of Gastrodia elata	24.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	41.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	33.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	26.700
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.200
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	33.750
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.750
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	54.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	54.670
SRP279888	Gastro	Gastrodia elata tuber	33.14
	Juven	Juvenile tuber	48.21
	Mother_Gastro	Mother tuber of Gastrodia elata	26.22
	Mother_Juven	Mother tuber of Juvenile	39.83