Detail information of GWHGAAEX006210/evm.TU.scaffold_178.96
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2431 | 0 | 1, 2-alpha-mannosidase |
| nr | gi|743770552|ref|XP_010915563.1| | 0 | PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q93Y37|MNS3_ARATH | 0 | Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 |
| trEMBL | tr|M0T6Z4|M0T6Z4_MUSAM | 0 | alpha-1,2-Mannosidase {ECO:0000256|RuleBase:RU361193} |
| TAIR | AT1G30000 | 0 | alpha-mannosidase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000197 | 1975913 | 2008516 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006210
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01532.19 | Glyco_hydro_47 | 142 | 628 | 8.20E-155 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH47 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K23741 | MAN1B, MNS3 | Metabolic pathways | map01100 |
| N-Glycan biosynthesis | map00510 | ||
| Various types of N-glycan biosynthesis | map00513 | ||
| Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004571 | Molecular Function | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity |
| GO:0005509 | Molecular Function | calcium ion binding |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.340 |
| SRR2545915 | Juvenile tuber | 31.490 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.200 |
| SRR5643514 | five period of Gastrodia elata | 22.400 | |
| SRR5643515 | five period of Gastrodia elata | 24.270 | |
| SRR5643524 | five period of Gastrodia elata | 22.850 | |
| SRR5643525 | five period of Gastrodia elata | 25.250 | |
| SRR5643528 | five period of Gastrodia elata | 29.490 | |
| SRR5643658 | five period of Gastrodia elata | 27.700 | |
| SRR5643659 | five period of Gastrodia elata | 21.770 | |
| SRR5643660 | five period of Gastrodia elata | 22.670 | |
| SRR5643661 | five period of Gastrodia elata | 24.380 | |
| SRR5643662 | five period of Gastrodia elata | 22.900 | |
| SRR5643663 | five period of Gastrodia elata | 22.410 | |
| SRR5643664 | five period of Gastrodia elata | 17.700 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.240 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.940 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.700 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.220 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.880 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.850 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.850 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.99 |
| Juven | Juvenile tuber | 20.47 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 33.07 | |
| Mother_Juven | Mother tuber of Juvenile | 25.43 |