Detail information of GWHGAAEX006211/evm.TU.scaffold_178.97


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG29057.00E-08Transcription initiation factor IIF, small subunit (RAP30)
nrgi|743777137|ref|XP_010918987.1|1.09E-27PREDICTED: transcription initiation factor IIF subunit beta-like [Elaeis guineensis]
trEMBLtr|M0UB93|M0UB93_MUSAM3.00E-23Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP21850_001}
TAIRAT1G755107.00E-08Transcription initiation factor IIF, beta subunit

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000019720418892045009+
Transcript Sequence

Network for GWHGAAEX006211

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03139TFIIF2, GTF2F2, TFG2 Basal transcription factors map03022

Gene Ontology

GO term OntologyName
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms43.200
SRR2545915Juvenile tuber47.590
SRP108465SRR5643513five period of Gastrodia elata62.590
SRR5643514five period of Gastrodia elata79.510
SRR5643515five period of Gastrodia elata68.640
SRR5643524five period of Gastrodia elata72.380
SRR5643525five period of Gastrodia elata119.390
SRR5643528five period of Gastrodia elata109.680
SRR5643658five period of Gastrodia elata101.490
SRR5643659five period of Gastrodia elata62.980
SRR5643660five period of Gastrodia elata76.500
SRR5643661five period of Gastrodia elata90.770
SRR5643662five period of Gastrodia elata94.320
SRR5643663five period of Gastrodia elata84.850
SRR5643664five period of Gastrodia elata98.800
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_157.490
SRR6049655Rhizomagastrodiae_C368-T10_good_144.650
SRR6049656Rhizomagastrodiae_C368-T07_good_152.030
SRR6049657Rhizomagastrodiae_C368-T07_good_163.130
SRR6049658Rhizomagastrodiae_C368-T04_good_138.790
SRR6049659Rhizomagastrodiae_C368-T04_good_136.490
SRR6049660Rhizomagastrodiae_C368-T01_good_150.970
SRR6049661Rhizomagastrodiae_C368-T04_good_146.400
SRR6049662Rhizomagastrodiae_C368-T01_good_151.320
SRR6049663Rhizomagastrodiae_C368-T01_good_147.510
SRR6049664Rhizomagastrodiae_C368-T10_good_156.040
SRR6049665Rhizomagastrodiae_C368-T10_good_156.040
SRP279888GastroGastrodia elata tuber 52.34
JuvenJuvenile tuber132.49
Mother_GastroMother tuber of Gastrodia elata 72.17
Mother_JuvenMother tuber of Juvenile 106.04