Gene detail

Detail information of GWHGAAEX006213/evm.TU.scaffold_179.2

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743770184\|ref\|XP_010915384.1\|	9.96E-88	PREDICTED: auxin-responsive protein IAA16-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q6H543\|IAA7_ORYSJ	3.00E-62	Auxin-responsive protein IAA7
trEMBL	tr\|D9ZIM7\|D9ZIM7_MALDO	6.00E-67	Auxin-responsive protein {ECO:0000256\|RuleBase:RU004549}
TAIR	AT3G16500	5.00E-51	phytochrome-associated protein 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000174	64599	71684	+

Transcript Sequence
>GWHTAAEX006213 CGAATGGCAATAAAATGCAGATGCTGGTGAAGACAGAAACAGAGCACACGCGTCTTCATTCTTGCTCCATTGAATGAAAGAAAGCCTGCTGCTTTTTGTACGGGCACGCTTGTCTCCCACTCTCTCTCTCTCCCTCTGTCTGTCTCCAAACAACTCCTGTCCTCCGCCCATTCCCTGATGGAATCTCTCTCTGTGGCTCTGTTCTGCCCGCTCCTCTCTTCTTAAAAATAGAATAATAGACGGGGTCCCCTTTAAATTCCGTTCTTTAAAACAGCCAGCGCTTAATACCAGTCTTCTCCGTTGCCTTCCATCACTTGCCAATGCTTTTTCAGTGAAAGAAAGGAGCAAGCTTAATATATTTTTCTCTGTTTGAAACAGAAAGGAGCTCTTTTTTGTCTCTTTACATTATACAAGCTCTGCTTACAGTTCAATAGCTATTTTCTCTCCAGAGTGAGAAGAGATGGACAAAGGCCTCAGAAAAGTAAGGTGTTTGGAAGATAACGAGGAGAGAAAGCTGGAGCTCAGGCTTGGACCTCCCGGAGATGACTCTTCAGAATTAATGAAGAAAAAGGAAAACGATCAAATTTTTTATTCTGTTCTCTCCCAAGACCGCTACTCCAGCGCTCCTAGCGCCATTTCCCCTCCTCGCCTTTCTGCTGGAACAAAGAGAGGCTTTTTTGAAAACATTGAACCCAAGGCAGAAGCTTTTCAGCAGCAGGAACAAACAGATTTTCTCCATTATCAGACTAAACAGGAGTTGGAAAAGGAAATAAGTCAGAGGACAAATGCAAGAACAGATGCCCGCTGTCCTCCACCACCACGGGCTGTTACTGCTTCTGGAAGTGAGGCTATGCCTCATAATAGGTCTCAAATAAGGTCTTCTTCTATTCCAGTGGTTGGATGGCCACCAATTCGGTCTTCCCGAAAAAATCTTGCCAGTTCCTCAAAGCAAACAGTTGAATCTCAATCTGGAAGGTTAGAAAATGTGCCAAAGTCTGGAAGCATCGGTAAAAGTCGGTTTGTGAAAATTAACATGGAAGGGATTCCCATTGGAAGAAAAATAGATCTGCTTGCTTTTGATTGCTATGAAAAACTATCTTCGGCCGTGGATGAGCTGTTTCGTGATCTTTATGCAGCTCAAATTGATCCTCTTAATGCAATAAAGAAGAATGTGGAGAAACCTGCAATTAAAGGCTTACTCGATGGGAGCGGCAAATACACTCTGATCTATGAGGATGATGAAGGTGACAGGATATTGGTTGGGGATGTTCCATGGGACATGTTTGTTTCCACAGCCAAGAGGTTGCGAATGCTGAAGAGTTCTGAATTGGCATCTTCATCAGCTATGGGAGCATTTTCTAGGAAGAAGAAACCAGTATGATTTCCATTACAAGCGTTTCAGCTGTTCCCTGCCTCAGTTATGGTTGAGTTTGATTTTTTTTTATTGACTGTTAACTTTTAATTTTTTGTATGATAATGTTGTAGCAGGGTATATGCAAGTATGTAACTTTTGTAGGTTCACTGTGTCTTGTTCAGTTATTGATTATTGACATCAGAAAGAATTAATTTGCTATTAACTGTGTTTGTTGTTAAGAACTTCTTGATTTTACTTGTCAACAGAGGAATAGCAGCTCATGAGATCTGTACAGTCAACCAAACTATAATTATTGTGTTTAAAATGGTTCAGTTGATGAAAATTCTGAAATTTTTTGTGCTTTATTCACCTTGAAAAGAATGTATATCAGTGTGATGGCATGTTCTGATTGAGAACAAAGAGAATGAAAGGGATTTTAATAACACATAATCAAGTTGTTGATTATGTGGATGTATGTCTTAAATCTTCTTGATCCAATTTGAACATGATAAAAGTGCTAGGCAGTCAAAATCCCTGGCAGAAATCAATATTATGAGAACGAAAGAAAAAAAACTTTGGTGCAATTAGGGCTCAGATATTTTTTAATAAAAAATATTTGCAGATGATTGAACCCTAGTATCTGTTGCAAATGATAACCTGTTGGGTTTCGCCCTAAAACACATCATATAAAAGCATCGGGATAAAAACAAGCAAGCATATTTAAGCTTATAACCCTTAAAACAAACGTATTTTTCCCACCAACAGGAAGAAGCTTTAC

Network for GWHGAAEX006213

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02309.15	AUX_IAA	19	291	2.70E-62

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA

KEGG pathway

KO	Enzyme	pathway	mapID
K14484	IAA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.290
SRP064423	SRR2545915	Juvenile tuber	27.810
SRP108465	SRR5643513	five period of Gastrodia elata	31.530
	SRR5643514	five period of Gastrodia elata	15.780
	SRR5643515	five period of Gastrodia elata	26.980
	SRR5643524	five period of Gastrodia elata	30.370
	SRR5643525	five period of Gastrodia elata	12.810
	SRR5643528	five period of Gastrodia elata	18.080
	SRR5643658	five period of Gastrodia elata	13.690
	SRR5643659	five period of Gastrodia elata	2.430
	SRR5643660	five period of Gastrodia elata	1.240
	SRR5643661	five period of Gastrodia elata	2.260
	SRR5643662	five period of Gastrodia elata	2.740
	SRR5643663	five period of Gastrodia elata	1.200
	SRR5643664	five period of Gastrodia elata	1.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.710
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	50.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	62.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	49.120
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.920
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.160
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.210
SRP279888	Gastro	Gastrodia elata tuber	5.91
	Juven	Juvenile tuber	3.87
	Mother_Gastro	Mother tuber of Gastrodia elata	218.29
	Mother_Juven	Mother tuber of Juvenile	32.88