Detail information of GWHGAAEX006214/evm.TU.scaffold_179.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|14601403|ref|NP_147939.1| | 5.00E-162 | elongation factor EF-2 [Aeropyrum pernix K1] |
| KOG | KOG0469 | 0 | Elongation factor 2 |
| nr | gi|743756117|ref|XP_010915202.1| | 0 | PREDICTED: elongation factor 2 [Elaeis guineensis] |
| Swissprot | tr|O23755|EF2_BETVU | 0 | Elongation factor 2 |
| trEMBL | tr|A0A059BNB6|A0A059BNB6_EUCGR | 0 | Uncharacterized protein {ECO:0000313|EMBL:KCW67722.1} |
| TAIR | AT1G56075 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000174 | 104493 | 110061 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006214
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00009.26 | GTP_EFTU | 17 | 342 | 1.60E-64 |
| PF03144.24 | GTP_EFTU_D2 | 393 | 468 | 9.90E-14 |
| PF14492.5 | EFG_II | 487 | 549 | 1.50E-11 |
| PF03764.17 | EFG_IV | 607 | 722 | 1.50E-33 |
| PF00679.23 | EFG_C | 724 | 811 | 2.30E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03234 | EEF2 | AMPK signaling pathway | map04152 |
| Oxytocin signaling pathway | map04921 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0005525 | Molecular Function | GTP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 61.490 |
| SRR2545915 | Juvenile tuber | 85.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 260.730 |
| SRR5643514 | five period of Gastrodia elata | 220.880 | |
| SRR5643515 | five period of Gastrodia elata | 213.730 | |
| SRR5643524 | five period of Gastrodia elata | 221.330 | |
| SRR5643525 | five period of Gastrodia elata | 212.020 | |
| SRR5643528 | five period of Gastrodia elata | 271.170 | |
| SRR5643658 | five period of Gastrodia elata | 183.850 | |
| SRR5643659 | five period of Gastrodia elata | 297.050 | |
| SRR5643660 | five period of Gastrodia elata | 321.610 | |
| SRR5643661 | five period of Gastrodia elata | 323.200 | |
| SRR5643662 | five period of Gastrodia elata | 301.490 | |
| SRR5643663 | five period of Gastrodia elata | 260.410 | |
| SRR5643664 | five period of Gastrodia elata | 278.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 192.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 128.940 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 232.030 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 159.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 202.110 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 145.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 200.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 179.150 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 259.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 267.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 236.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 236.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 243.50 |
| Juven | Juvenile tuber | 250.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 177.55 | |
| Mother_Juven | Mother tuber of Juvenile | 213.74 |