Detail information of GWHGAAEX006220/evm.TU.scaffold_179.10


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|328954243|ref|YP_004371577.1|2.00E-163glutaminyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
KOGKOG11480Glutaminyl-tRNA synthetase
nrgi|672144186|ref|XP_008795989.1|0PREDICTED: glutamine--tRNA ligase [Phoenix dactylifera]
Swissprottr|P52780|SYQ_LUPLU0Glutamine--tRNA ligase
trEMBLtr|M0T9H3|M0T9H3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P23250_001}
TAIRAT1G253500glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000174348748381916-
Transcript Sequence

Network for GWHGAAEX006220

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04558.14tRNA_synt_1c_R1852403.30E-46
PF00749.20tRNA-synt_1c3406443.70E-118
PF03950.17tRNA-synt_1c_C6478363.20E-39
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01886QARS, glnS Metabolic pathways map01100
Aminoacyl-tRNA biosynthesismap00970

Gene Ontology

GO term OntologyName
GO:0043039Biological ProcesstRNA aminoacylation
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0006412Biological Processtranslation
GO:0006418Biological ProcesstRNA aminoacylation for protein translation
GO:0000166Molecular Functionnucleotide binding
GO:0004812Molecular Functionaminoacyl-tRNA ligase activity
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms28.220
SRR2545915Juvenile tuber30.400
SRP108465SRR5643513five period of Gastrodia elata28.800
SRR5643514five period of Gastrodia elata31.750
SRR5643515five period of Gastrodia elata28.460
SRR5643524five period of Gastrodia elata30.280
SRR5643525five period of Gastrodia elata22.690
SRR5643528five period of Gastrodia elata31.830
SRR5643658five period of Gastrodia elata26.360
SRR5643659five period of Gastrodia elata32.330
SRR5643660five period of Gastrodia elata32.140
SRR5643661five period of Gastrodia elata27.600
SRR5643662five period of Gastrodia elata31.690
SRR5643663five period of Gastrodia elata34.990
SRR5643664five period of Gastrodia elata35.800
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_133.100
SRR6049655Rhizomagastrodiae_C368-T10_good_135.860
SRR6049656Rhizomagastrodiae_C368-T07_good_132.640
SRR6049657Rhizomagastrodiae_C368-T07_good_132.570
SRR6049658Rhizomagastrodiae_C368-T04_good_138.050
SRR6049659Rhizomagastrodiae_C368-T04_good_138.360
SRR6049660Rhizomagastrodiae_C368-T01_good_133.900
SRR6049661Rhizomagastrodiae_C368-T04_good_133.530
SRR6049662Rhizomagastrodiae_C368-T01_good_138.180
SRR6049663Rhizomagastrodiae_C368-T01_good_138.710
SRR6049664Rhizomagastrodiae_C368-T10_good_144.040
SRR6049665Rhizomagastrodiae_C368-T10_good_144.040
SRP279888GastroGastrodia elata tuber 54.10
JuvenJuvenile tuber51.74
Mother_GastroMother tuber of Gastrodia elata 50.90
Mother_JuvenMother tuber of Juvenile 55.68