Detail information of GWHGAAEX006222/evm.TU.scaffold_179.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672179123|ref|XP_008809721.1| | 3.15E-111 | PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9M9S3|WHY1_ARATH | 2.00E-91 | Single-stranded DNA-binding protein WHY1, chloroplastic (Precursor) |
| trEMBL | tr|M0RK35|M0RK35_MUSAM | 2.00E-107 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P21100_001} |
| TAIR | AT1G14410 | 7.00E-91 | ssDNA-binding transcriptional regulator |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000174 | 390197 | 410845 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006222
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08536.10 | Whirly | 92 | 226 | 6.10E-56 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Whirly |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0006952 | Biological Process | defense response |
| GO:0003697 | Molecular Function | single-stranded DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.380 |
| SRR2545915 | Juvenile tuber | 10.730 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.040 |
| SRR5643514 | five period of Gastrodia elata | 17.240 | |
| SRR5643515 | five period of Gastrodia elata | 13.460 | |
| SRR5643524 | five period of Gastrodia elata | 15.060 | |
| SRR5643525 | five period of Gastrodia elata | 6.940 | |
| SRR5643528 | five period of Gastrodia elata | 5.030 | |
| SRR5643658 | five period of Gastrodia elata | 5.500 | |
| SRR5643659 | five period of Gastrodia elata | 11.720 | |
| SRR5643660 | five period of Gastrodia elata | 11.500 | |
| SRR5643661 | five period of Gastrodia elata | 12.640 | |
| SRR5643662 | five period of Gastrodia elata | 13.820 | |
| SRR5643663 | five period of Gastrodia elata | 14.160 | |
| SRR5643664 | five period of Gastrodia elata | 12.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.240 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.440 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.65 |
| Juven | Juvenile tuber | 7.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.04 | |
| Mother_Juven | Mother tuber of Juvenile | 5.51 |