Detail information of GWHGAAEX006223/evm.TU.scaffold_179.13
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|512551236|ref|YP_008089142.1| | 3.00E-66 | Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chthonomonas calidirosea T49] |
| KOG | KOG1342 | 0 | Histone deacetylase complex, catalytic component RPD3 |
| nr | gi|672179102|ref|XP_008809711.1| | 0 | PREDICTED: probable histone deacetylase 19 [Phoenix dactylifera] |
| Swissprot | tr|O22446|HDA19_ARATH | 0 | Histone deacetylase 19 |
| trEMBL | tr|A0A059APE9|A0A059APE9_EUCGR | 0 | Histone deacetylase {ECO:0000256|PIRNR:PIRNR037913} |
| TAIR | AT4G38130 | 0 | histone deacetylase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000174 | 439596 | 467982 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006223
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00850.18 | Hist_deacetyl | 36 | 323 | 2.20E-81 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K06067 | HDAC1_2 | Notch signaling pathway | map04330 |
| Cell cycle | map04110 | ||
| Thyroid hormone signaling pathway | map04919 | ||
| Longevity regulating pathway - multiple species | map04213 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016575 | Biological Process | histone deacetylation |
| GO:0004407 | Molecular Function | histone deacetylase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 29.630 |
| SRR2545915 | Juvenile tuber | 39.680 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 67.630 |
| SRR5643514 | five period of Gastrodia elata | 76.860 | |
| SRR5643515 | five period of Gastrodia elata | 72.730 | |
| SRR5643524 | five period of Gastrodia elata | 81.870 | |
| SRR5643525 | five period of Gastrodia elata | 67.180 | |
| SRR5643528 | five period of Gastrodia elata | 71.780 | |
| SRR5643658 | five period of Gastrodia elata | 60.250 | |
| SRR5643659 | five period of Gastrodia elata | 78.720 | |
| SRR5643660 | five period of Gastrodia elata | 75.540 | |
| SRR5643661 | five period of Gastrodia elata | 72.420 | |
| SRR5643662 | five period of Gastrodia elata | 66.940 | |
| SRR5643663 | five period of Gastrodia elata | 65.390 | |
| SRR5643664 | five period of Gastrodia elata | 62.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 60.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 53.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 68.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 58.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 67.220 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 63.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 61.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 66.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 80.480 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 72.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 79.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 79.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 109.22 |
| Juven | Juvenile tuber | 105.92 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 110.61 | |
| Mother_Juven | Mother tuber of Juvenile | 129.10 |