Detail information of GWHGAAEX006228/evm.TU.scaffold_179.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 1.00E-42 | two component regulator [Flavobacterium johnsoniae UW101] |
| nr | gi|672140590|ref|XP_008794105.1| | 0 | PREDICTED: receptor-like protein kinase 5 [Phoenix dactylifera] |
| Swissprot | tr|Q9SGP2|HSL1_ARATH | 0 | Receptor-like protein kinase HSL1 (Precursor) |
| trEMBL | tr|B9RS14|B9RS14_RICCO | 0 | Serine-threonine protein kinase, plant-type, putative {ECO:0000313|EMBL:EEF45874.1} |
| TAIR | AT5G25930 | 0 | Protein kinase family protein with leucine-rich repeat domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000174 | 528648 | 532558 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006228
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 27 | 64 | 7.50E-06 |
| PF12799.6 | LRR_4 | 91 | 131 | 3.60E-07 |
| PF13855.5 | LRR_8 | 263 | 320 | 2.40E-07 |
| PF13855.5 | LRR_8 | 518 | 575 | 1.70E-06 |
| PF00069.24 | Pkinase | 683 | 952 | 6.50E-40 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.260 |
| SRR2545915 | Juvenile tuber | 9.940 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.760 |
| SRR5643514 | five period of Gastrodia elata | 13.330 | |
| SRR5643515 | five period of Gastrodia elata | 36.860 | |
| SRR5643524 | five period of Gastrodia elata | 16.850 | |
| SRR5643525 | five period of Gastrodia elata | 16.480 | |
| SRR5643528 | five period of Gastrodia elata | 34.280 | |
| SRR5643658 | five period of Gastrodia elata | 8.840 | |
| SRR5643659 | five period of Gastrodia elata | 25.580 | |
| SRR5643660 | five period of Gastrodia elata | 11.280 | |
| SRR5643661 | five period of Gastrodia elata | 17.500 | |
| SRR5643662 | five period of Gastrodia elata | 24.290 | |
| SRR5643663 | five period of Gastrodia elata | 15.160 | |
| SRR5643664 | five period of Gastrodia elata | 33.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 33.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 27.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 45.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 48.780 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 34.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.54 |
| Juven | Juvenile tuber | 9.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 52.79 | |
| Mother_Juven | Mother tuber of Juvenile | 40.13 |