Gene detail

Detail information of GWHGAAEX006229/evm.TU.scaffold_179.18

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743869675\|ref\|XP_010905868.1\|	2.73E-88	PREDICTED: microtubule-associated protein futsch-like isoform X3 [Elaeis guineensis]
Swissprot	tr\|Q8GYX9\|WDL1_ARATH	5.00E-17	Protein WVD2-like 1
trEMBL	tr\|D7T8T9\|D7T8T9_VITVI	6.00E-58	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26910.3}
TAIR	AT1G70950	6.00E-23	TPX2 (targeting protein for Xklp2) protein family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000174	533503	563671	-

Transcript Sequence
>GWHTAAEX006229 TGCAAACAGTACTGGTTATTAAGAAGTCTCATCTTATGAGAGTACAAAACTCTCTTCTTTGTAGGCTGTAGGAACTACAATTTCAAACTCTGCGGATTCGGCTTTTACGCTGAAAGGATGATTTTTGAAGCATTTTCTTCTTAAAGATCGAGTAGAACACTTTCGATCGAGGCCTGTTTCGTTTTATTTGGTTCGCAGTAGGAAAAGATTCCGTGGAAATGATGCATTCGAGGCTTCTTTGCGTATCGGAGGTTCATTCCATGGCTAAAGAGGCTTGGTAAGGCTGTCTATTTTCATGATTTGATACTTTTTGGGCTGGTAAATAATGGCAGGAGAAGTTCAAGAAGGGGACGCACTTCAGGATGAGAGGTTACTAAATGATTCCATATCATTTGGAAGATTTGAAGTTGAATCATTATCCTGGGAAAGAAGATCATCATTCTCACATAACAGATATCTCGAAGAGGTTGAAAAGTACTCTACACCTGGTTCAGTTACTAAAAAGAAAGAATACTTTGAAGCCCACTTCAAGAAAAAGCCCTTTCTTCATGTTTCAGCAGAGAGTCCAAAGGAAACCAAAATCGGGAATGATGAAAGTAACACTGGTGATATGTGTAGTATCATGGAAGATTTTGTAGGTCATGGTAGTCATGAACTTATTGAAGATTCATGTGGTGATGGAGATGCCCCAACTCTCCCAGATGAATATGATGCAGTTGAACTTCAAAAGGAGGAGATGCTGTCTGCAGAATTACATGCGGGATCTTCATCTTTCAACAGTGAAAAACTTTCAGAATTATTTAATAAGTCATTGACTTTAGATGGCACAGTTCAAAATCACGTTGGAGATAATAAAAAACTGCCTGAGCATGTGGATGCTTCATCAAAGATCTCTATGATTAATAAAAAGAAAGAGTCCGGCCTAAGGAAATCTCAAAATGTTTCAATGAAGACTCGTGAGACAGCTGAACAAAAAATTGGAAAGTCACTACCCCAAACGCATTTATCTACTCAGCAGATGTCCAAGAAACCTTCAAAAAGCAGCAAACTTGTCTCTAATAGACGGCATAAGGAAGTGAACTCTAAAAATACATCTGTAAAACTGGAAAAGTCTGTTGTTTCAAAAGAGCAATCTTCTACAACAGCAGAAAATAGGGATTTCAAAATAATGGCTTCTAGAAATATGAAAGCTAAAGCTAGTTCAGATGTTAAAAGTGAAGAAGCTGTGAGAGTGAAGCAGGCTGAAGTTACGCATCGTCCTACCCACCAAACTGTGAACAGGGTTAAATTGGTCTATAAGGCAGAAGATAAGCAAACTTCAGTTGTTTTTAACTTCAAAAGCAGTGAAAGGGCTGAGAAAAGAAAAGAGTATAATTTGAAGCTGGAGGAGAAGCTCCATGCCAAAGAGGCTGAGTTAAATGAGATTCAAGCTAGAACCGAGGAGGTGAAAGAAGCAGAGATGAAGCAATTTCGCAAAAGCCTCAACTTCAAAGCAAGTCCCATGCCATCTTTCTATCGTGAATCTGCTTCCAAAGTCTCTGAACCTAAAAAGGCATCCGTCCTACAGGCAAAGTCTCCGACTATTCGGCGGGGCAAGTTTTCCCCTCTTCCAACATATCCGTCTCACGAAAATTCACTTGCTTCCCGTGCATCAAATCAAGAAACCCCTTTGCTTTGTGAACCGCAGCACTCAGCAACCCAGCCTGCCTCCCCCGCGGTCTCCGGTGCACCCTCCAATGATCATCCGGCCGAAGCAAATGGAAGCAAGAGGACAACTAATTGTTGGGCGAAAAGGCCGGATGGTTCAAGAGGTGAAGAAAGGGGTAATGGGGTGGGGTTGGGAAAGAGGGGAGGGGGGAGTAGTAAGAGTGAGATGGGAAATGTGAAGGGTATTGTTGGTGGAGGTGCAGCTGTTGTCCATGTTGCTTCCTAAAGTTTGTTTATGGTATATGATTATGATTTAATTCATTTGTTAATGATCTTTAGGGTATTAATCTCAGGATTTTATGTGTACCTTAATATACTCTACATTTGTTTCTTTGGACTGCTGCTGCTTAAATGTTTTATGTTTTTTTGAATTATAATCATAAATATTTGTATAGTGCCTTGTGCTATGAAACAAGACAGAAGAATGTATTATTATTATAATATTAAACCTTATGCTGTAATTAATTAACTAAACTGGATTATACTATCTGTTGTTTCGTG

Network for GWHGAAEX006229

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06886.10	TPX2	337	393	8.60E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	36.310
SRP064423	SRR2545915	Juvenile tuber	54.720
SRP108465	SRR5643513	five period of Gastrodia elata	39.700
	SRR5643514	five period of Gastrodia elata	45.290
	SRR5643515	five period of Gastrodia elata	41.200
	SRR5643524	five period of Gastrodia elata	45.100
	SRR5643525	five period of Gastrodia elata	37.740
	SRR5643528	five period of Gastrodia elata	44.940
	SRR5643658	five period of Gastrodia elata	42.600
	SRR5643659	five period of Gastrodia elata	41.850
	SRR5643660	five period of Gastrodia elata	46.380
	SRR5643661	five period of Gastrodia elata	45.840
	SRR5643662	five period of Gastrodia elata	36.990
	SRR5643663	five period of Gastrodia elata	36.600
	SRR5643664	five period of Gastrodia elata	44.460
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.740
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	30.110
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.880
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	30.770
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	26.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	26.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.310
SRP279888	Gastro	Gastrodia elata tuber	23.43
	Juven	Juvenile tuber	32.46
	Mother_Gastro	Mother tuber of Gastrodia elata	38.33
	Mother_Juven	Mother tuber of Juvenile	36.81