Detail information of GWHGAAEX006232/evm.TU.scaffold_179.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1668 | 2.00E-96 | Elongation factor 1 beta/delta chain |
| nr | gi|6015064|sp|P93447.3|EF1D_PIMBR | 4.22E-114 | RecName: Full=Elongation factor 1-delta; Short=EF-1-delta; AltName: Full=Elongation factor 1B-beta; AltName: Full=eEF-1B beta [Spuriopimpinella brachycarpa] |
| Swissprot | tr|P93447|EF1D_PIMBR | 2.00E-116 | Elongation factor 1-delta |
| trEMBL | tr|M5XHX4|M5XHX4_PRUPE | 8.00E-103 | Uncharacterized protein {ECO:0000313|EMBL:EMJ25101.1} |
| TAIR | AT2G18110 | 2.00E-96 | Translation elongation factor EF1B/ribosomal protein S6 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000174 | 810797 | 826963 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006232
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00736.18 | EF1_GNE | 138 | 225 | 9.90E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006414 | Biological Process | translational elongation |
| GO:0003746 | Molecular Function | translation elongation factor activity |
| GO:0005853 | Cellular Component | eukaryotic translation elongation factor 1 complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1024.580 |
| SRR2545915 | Juvenile tuber | 1283.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 793.600 |
| SRR5643514 | five period of Gastrodia elata | 799.950 | |
| SRR5643515 | five period of Gastrodia elata | 710.930 | |
| SRR5643524 | five period of Gastrodia elata | 768.650 | |
| SRR5643525 | five period of Gastrodia elata | 630.410 | |
| SRR5643528 | five period of Gastrodia elata | 693.960 | |
| SRR5643658 | five period of Gastrodia elata | 564.000 | |
| SRR5643659 | five period of Gastrodia elata | 970.330 | |
| SRR5643660 | five period of Gastrodia elata | 942.310 | |
| SRR5643661 | five period of Gastrodia elata | 1022.160 | |
| SRR5643662 | five period of Gastrodia elata | 939.190 | |
| SRR5643663 | five period of Gastrodia elata | 995.470 | |
| SRR5643664 | five period of Gastrodia elata | 976.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1128.210 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 862.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1181.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1077.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 953.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 905.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 908.940 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 949.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 908.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 841.170 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1193.060 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1193.060 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1,568.75 |
| Juven | Juvenile tuber | 1,186.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 596.06 | |
| Mother_Juven | Mother tuber of Juvenile | 917.62 |