Gene detail

Detail information of GWHGAAEX006237/evm.TU.scaffold_179.29

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672118395\|ref\|XP_008782406.1\|	0	PREDICTED: putative nuclear matrix constituent protein 1-like protein [Phoenix dactylifera]
trEMBL	tr\|M0T5I3\|M0T5I3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P09340_001}
TAIR	AT1G67230	1.00E-151	little nuclei1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000174	865949	894666	-

Transcript Sequence
>GWHTAAEX006237 GGAAATGAAATCTAGCATTTTCGCAAAACAAATAGGAAGGCTGTGTTCAATTCTCCTCTTATCAATCGGCATCATTCCTCTTTAATTCCTTGGCCTCGATTCCTTCCAATTGTCTCAGGTTTATGAAGGAGGGTTTCTGATGTTTACGCCTCAGAGGAAAGGCTGGTCCGGAGTGGGTTGGCAGGAGAATGGTTCTGTGTCGGGGACAAACCCTAGGAACACGTTTGGAGTGATTCTTGGTCGGGAAAAACGTGATATTGGAGCGGAGGAAGTTCCGGTGCCGCCGCCTCAAAGGCTGTTGGGGGAGAAAGATGGTGAACCTGCGGGCAATGGAATTGGCGGAAGCAGTTCCGAGGATTGGAAGAGGTTCAGGGAAGCGGGCCTACTGGATGAGAAGGTGCAGTTGAGGAAGGACAAAGAAGTTCTTGTGGAGAGAGTTTCTGCACTTGAGATTGAGCGTGATGAGTGTTTATATGATTTGGGCGTTCTTCTTATCGAAAAGAAGGAGTGGTCCTCTCAAATTGAAGAACTGAAACAGTCTTTGTCAGAAGCACAGGAAGTTTTGAAGAGGGAACAGACGACACACATTATTGTTATATCAGAATTGGAGAAGCGTGAAGACAATTTGAAAAAAGCTTTGGGAATAGAAAAACATTGTGTGCTAGATCTAGAAAAAGCATTGCGGGAGATGCGTGCGGAAGTTTCAGAGGCCAAATTTACTTCTGAGAATAAATTAGCAAATGCACATGCACTTGAGGCCAGCCTTGAAGAAAAACAATTAGAGATTGAATCAAAAGTGCATTCTGCAGATGCCAGGCTCGCAGAAGCAAATAGGAAGAATTCAGAAATAGATCGTAAGTTTGAGGAGCTAGAGGCTCGTGAACATAAATTGCAAAGAGAGCTTTCTTCGTTGCACACTGAGCGGAAAACATTTGAAAAGGATCTGTCTAAACAGCGAGAGCATTTACTGGTTTGGGAAAAGGAATTGCAGGTAAAACAAAGAAAGCTTCTTGATGAACAAAGACTTCTTAATGGGAGGGAGGAGAGGGCAAATGAAGCAGGCTTGATCCTCAAGAATAAGGAAATAGATATTGAAGAAGCAAAAAGGAAAATTGATGCTGCTAATACTACCCTTAAAAGTCAAGAGGAAGAATATAATGAAAGACTAAGAGCTTTGACTATTAAAGAGAAGGGCGTTGAGATTAGAAGTTCAAGTCTTGAGAAGAAAGAGAAAGATTTGATGGCACTAGAAGAAAAGCTTAGTGCTAGGGAAAGGGAAGAGATCCAAAAACTTTTAGATGAACACAATGCAATTTTCAATGTCAAGAAACAAGATTTCGAGTTGGAGATGGCTGAGAAAAGAAGGTCTTTTGATGAAGAGGTTAAAAACCATATTGATAAGCTGGACAAGGATAAAAATATGATCAAATGCAAAGAGGACCAGCTTCTTGAAAGAAAAAAAGCGTTAGACATTGAAGCTTCTAACTTAAAAAATAAAGAAATGGACCTTGACTCTAAGTCAAAAGCTTTGAAGAAGTGGGAGGGCTCTTTAAAAACTGAAGAGAAATTATTGCAAGAACAAAGGAAGCAAATACACAAGGATTTAAATGATTTAGAAACTTCAAGAGTCGTACTTCACAAAGAGAAGCTAGCTAATGAGGCTGAGGTAAAGAAGGTCATTTTCGAGAAGGAAAATCTTAAACTTACACAGGAAGAAAAGCAACAGCATCTTAAGTTGCAAACAGAGTTGAGGCTGGAGAAGGATGAATATCGTATGATGATGGAATCACTTGAAAAGCAAAAGGAGGCACTAAGGCTGGAGAGAGAAATGTTTGAGAGGGACTGGGAGGCACTGGATGAGAAAAGAGTGTCAATAGAAGCAGACATAAAACAGCTAAAGGCTGAGAGAGAAAACTTTGAGAAATGGCGACATAATGAAGAGGAGAAGATGAAACATGATGATCTTGATGGCAGAGCAGTCATGCAGAGGGAGGTTGAGGACCTCAGATTGAAGAAGGAAACATTTGAGAAGATGATGGCTCAGGAGAGATCTGATGCTCGTGCCGATATTGAAAGTGAGCGAGCTGATATGTCTCGGGAGTTTGAACTGTTTAAGCATGGTCTTGAAATGAACATGCAGAGAAAACAAGATGATTTGGAGAAGAGTTTCCAAGAAAAGAAGAATGAGTTCGAAAGGTGGAAAGAAGTGGAACTAAGTCGTATCAAATCTTTGAGTGAGTCAAATGAGTTTGAACTTAGAAGGTTGGAGATCCAGCAAAATCAATTACTGAGGGATAAGGAAGGGTTTTCAGAGCAAAGACAAAAGTTAGAAGCAGATAGAGTAGAAATTCAAAATGACATAGAAACTCTGCTTAGGCTAAGCAAGAATCTGAAACACCAGCGGGAAGAATTTGCCAAAGAGAGAGAGATCGTTCTTTCAGCAGTTAAAAAATGCAAGAGCTGTCATAACTGTGGTGTTCCAATTAATAACTTAGATCTTTTTGATCTTCAGCAATTAGGTGTTACGGAGGATTCTGAAGAAGTATTGTTCCCAAGCCTCACAGATGGTTTTTTAGAAGAGCACTTAAAAAGCGGAAGTGCAGATATGTCACATGAAGGTCCAATTGCAGGGTCGGCCAAGTCAGGGAGCAATATGAAACGCTGGTTTGAAAAATGTGCTAATTTATTTAAAATCTCTCCAAGAAATGGTTTACGTCCATCCACTGAAGACCAGATTGAAGCTTCATTTAGCGAGCGAATTAATAAAATTGCTTTAGAAGATGCTGAATATGAACCTGCACGATCTGCCTCTTTTGAAAAGCAAATGGCTCATTTTGATATTGCAGATGTAGTGACTGGAGAACTGAATAGAGTAGATAACATGGAAGCTTCTTTTGATGGGGCTGGCAGCTCCATGGACATTGTGAGGATTGACTCATATGATGGTACACAAAAAACCGCAGCAGCTTCTGATGACAAAAACAATGAAGCAGAAGGATCTTCTATGCATTCTGAGAAGTATTTACAGCCGGAGCTTTCCAACCAGGGGCAGCGACGGCAGCCAAGACGAAGAGCAAAATCTAAGTCCATACGGAGAACACATTCTGTGATGGCTGTTGTTGAAGATGCCAAAGCTATTCTTGGAGAAACTTTTGAGTTGACGGTGGGCGAGCAACAGTATGGTAATGCTAAAGATTGTCAAAATATTACTGATGAGATCCCAGAAGCTTCACTAAAAGCTGATGGAAAAGAGACCGGTAAAAGGAAAAAAAGACGCACAAGAGAAGTGGAGCCGGATGACAGTGAACCTCTTTCTGAGAGTTTGTCTATTGGTGGGCGCCGGAAAAAGAGGCTAACTTCTTTGCAACCTAAAACCCCTGTGGACAAACGCTACAATTTAAGGCGTTCTACTGTTGCAAATACTACTGCAACATCCCAGGGAGCATCACTTCAGATTGGAGTGGGTAATAGCCGGAGCCTTCAGTCATTACATGAAAGCAATTTTGTGGAGGGTGATCAAGTAGAAAGCAATAAGGTGAAAGGTAGTTATCCAAAAAGCAACAGGGTGGAAGATGGCCATCCAAAAAGCAATGTGGTGGATGGTCAACCAGAAAACATAAATATTGAGGGCGGTCAATCTGCAAAGAATAAGGTGGAGGGTTGTCAATCAATTGGAATTGTGGAGGGTGGCCATGGTGCTGAAAGAAATTCCTCTCATAATCTAAGGCCATCTGGTTCGATAGAAAATTCCGAAAATATTCCTAACAAATCTGTTATTCAGAGTGTTGTAGAAGTTCAATCAGAAAACTTAGACCAGCATGGAAGCCAGGAGGAAGTCAACGGTGGCAACATCATAGAGCAGATTCAGGAGGACGGGAATGAAGCAGACGGAGATGATGGCGTGTCCGCAAAATCCACCGAGTTCAGCAAGCAGATTGTCAAGTCGGTGGAGTTCAGTGAGCAGCCTGCAGAAGAAGACGGAGATGAAGCTGATGATGATAATATACTGTTGTCAGCAGATACAGAAGAAGGAACTCATCACTCAGACTGGGGTTCTGGAAGTGAAGATGATGAGGGAGATGACGAGGAGGATTCTGAGAGGCACAATGCTTCTATTGGAAAGAAACTGTGGAATTTCTTCACCACTTAGACCTCATCATTTCAAATATATTTGTATGTACCTTGAGTTGGGTGTATCATCAGATACTCTAATTGCTCATTTTCTTCTTTTTTTTGTTCTTTTATATTGTTAACTCTAGTCATAGATCTGAATTCTGAAACAGCTAATTAACCCTCATGTGTATGTATTTGGGATTGATTGCAGCGTTAGCTTTTGGATTTCTGATTCAAATTTACTTGTCTTAGTGTCCATGAATTTTTTTTTTTTTTAAT

Network for GWHGAAEX006237

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX006237
MFTPQRKGWSGVGWQENGSVSGTNPRNTFGVILGREKRDIGAEEVPVPPPQRLLGEKDGEPAGNGIGGSSSEDWKRFREAGLLDEKVQLRKDKEVLVERVSALEIERDECLYDLGVLLIEKKEWSSQIEELKQSLSEAQEVLKREQTTHIIVISELEKREDNLKKALGIEKHCVLDLEKALREMRAEVSEAKFTSENKLANAHALEASLEEKQLEIESKVHSADARLAEANRKNSEIDRKFEELEAREHKLQRELSSLHTERKTFEKDLSKQREHLLVWEKELQVKQRKLLDEQRLLNGREERANEAGLILKNKEIDIEEAKRKIDAANTTLKSQEEEYNERLRALTIKEKGVEIRSSSLEKKEKDLMALEEKLSAREREEIQKLLDEHNAIFNVKKQDFELEMAEKRRSFDEEVKNHIDKLDKDKNMIKCKEDQLLERKKALDIEASNLKNKEMDLDSKSKALKKWEGSLKTEEKLLQEQRKQIHKDLNDLETSRVVLHKEKLANEAEVKKVIFEKENLKLTQEEKQQHLKLQTELRLEKDEYRMMMESLEKQKEALRLEREMFERDWEALDEKRVSIEADIKQLKAERENFEKWRHNEEEKMKHDDLDGRAVMQREVEDLRLKKETFEKMMAQERSDARADIESERADMSREFELFKHGLEMNMQRKQDDLEKSFQEKKNEFERWKEVELSRIKSLSESNEFELRRLEIQQNQLLRDKEGFSEQRQKLEADRVEIQNDIETLLRLSKNLKHQREEFAKEREIVLSAVKKCKSCHNCGVPINNLDLFDLQQLGVTEDSEEVLFPSLTDGFLEEHLKSGSADMSHEGPIAGSAKSGSNMKRWFEKCANLFKISPRNGLRPSTEDQIEASFSERINKIALEDAEYEPARSASFEKQMAHFDIADVVTGELNRVDNMEASFDGAGSSMDIVRIDSYDGTQKTAAASDDKNNEAEGSSMHSEKYLQPELSNQGQRRQPRRRAKSKSIRRTHSVMAVVEDAKAILGETFELTVGEQQYGNAKDCQNITDEIPEASLKADGKETGKRKKRRTREVEPDDSEPLSESLSIGGRRKKRLTSLQPKTPVDKRYNLRRSTVANTTATSQGASLQIGVGNSRSLQSLHESNFVEGDQVESNKVKGSYPKSNRVEDGHPKSNVVDGQPENINIEGGQSAKNKVEGCQSIGIVEGGHGAERNSSHNLRPSGSIENSENIPNKSVIQSVVEVQSENLDQHGSQEEVNGGNIIEQIQEDGNEADGDDGVSAKSTEFSKQIVKSVEFSEQPAEEDGDEADDDNILLSADTEEGTHHSDWGSGSEDDEGDDEEDSERHNASIGKKLWNFFTT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	113.350
SRP064423	SRR2545915	Juvenile tuber	94.470
SRP108465	SRR5643513	five period of Gastrodia elata	65.320
	SRR5643514	five period of Gastrodia elata	55.670
	SRR5643515	five period of Gastrodia elata	59.300
	SRR5643524	five period of Gastrodia elata	54.470
	SRR5643525	five period of Gastrodia elata	71.550
	SRR5643528	five period of Gastrodia elata	79.100
	SRR5643658	five period of Gastrodia elata	78.110
	SRR5643659	five period of Gastrodia elata	54.790
	SRR5643660	five period of Gastrodia elata	60.610
	SRR5643661	five period of Gastrodia elata	49.790
	SRR5643662	five period of Gastrodia elata	56.660
	SRR5643663	five period of Gastrodia elata	55.250
	SRR5643664	five period of Gastrodia elata	61.280
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	64.910
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	45.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	56.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	91.110
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	80.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	101.150
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	79.290
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	81.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	55.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	60.390
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	47.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	47.550
SRP279888	Gastro	Gastrodia elata tuber	59.69
	Juven	Juvenile tuber	87.52
	Mother_Gastro	Mother tuber of Gastrodia elata	90.50
	Mother_Juven	Mother tuber of Juvenile	124.47