Detail information of GWHGAAEX006246/evm.TU.scaffold_179.36


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41972.00E-47FOG: PPR repeat
nrgi|743869748|ref|XP_010905883.1|0PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Elaeis guineensis]
Swissprottr|Q9FVX2|PP129_ARATH9.00E-48Pentatricopeptide repeat-containing protein At1g77360, mitochondrial (Precursor)
trEMBLtr|A0A061EGG6|A0A061EGG6_THECC3.00E-175Tetratricopeptide repeat-like superfamily protein, putative {ECO:0000313|EMBL:EOY03976.1}
TAIRAT1G773602.00E-47Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017410331811035072+
Transcript Sequence

Network for GWHGAAEX006246

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR1161461.2
PF13041.5PPR_23263716.10E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.950
SRR2545915Juvenile tuber8.840
SRP108465SRR5643513five period of Gastrodia elata12.370
SRR5643514five period of Gastrodia elata12.360
SRR5643515five period of Gastrodia elata11.220
SRR5643524five period of Gastrodia elata13.550
SRR5643525five period of Gastrodia elata10.990
SRR5643528five period of Gastrodia elata11.290
SRR5643658five period of Gastrodia elata8.980
SRR5643659five period of Gastrodia elata15.000
SRR5643660five period of Gastrodia elata13.410
SRR5643661five period of Gastrodia elata14.770
SRR5643662five period of Gastrodia elata14.650
SRR5643663five period of Gastrodia elata12.700
SRR5643664five period of Gastrodia elata10.330
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.750
SRR6049655Rhizomagastrodiae_C368-T10_good_115.170
SRR6049656Rhizomagastrodiae_C368-T07_good_115.020
SRR6049657Rhizomagastrodiae_C368-T07_good_19.750
SRR6049658Rhizomagastrodiae_C368-T04_good_110.670
SRR6049659Rhizomagastrodiae_C368-T04_good_18.390
SRR6049660Rhizomagastrodiae_C368-T01_good_110.130
SRR6049661Rhizomagastrodiae_C368-T04_good_18.430
SRR6049662Rhizomagastrodiae_C368-T01_good_118.220
SRR6049663Rhizomagastrodiae_C368-T01_good_116.200
SRR6049664Rhizomagastrodiae_C368-T10_good_117.390
SRR6049665Rhizomagastrodiae_C368-T10_good_117.390
SRP279888GastroGastrodia elata tuber 11.32
JuvenJuvenile tuber10.89
Mother_GastroMother tuber of Gastrodia elata 8.22
Mother_JuvenMother tuber of Juvenile 4.94