Gene detail

Detail information of GWHGAAEX006251/evm.TU.scaffold_179.43

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|430747635\|ref\|YP_007206764.1\|	2.00E-09	choline kinase [Singulisphaera acidiphila DSM 18658]
KOG	KOG2686	3.00E-163	Choline kinase
nr	gi\|672108745\|ref\|XP_008786565.1\|	2.40E-177	PREDICTED: probable choline kinase 2 [Phoenix dactylifera]
Swissprot	tr\|Q8L518\|CK2_ARATH	1.00E-163	Probable choline kinase 2
trEMBL	tr\|K3XJ52\|K3XJ52_SETIT	3.00E-173	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si001925m}
TAIR	AT1G74320	3.00E-163	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000174	1078608	1091371	-

Transcript Sequence
>GWHTAAEX006251 CACAAATACCATTCACTTCAAATTCTTGAAATTTTGAGGTAATTATACGAATGAAGCTTTAATCAAACAGACTTAGCACGGCTCCCCGCCTTCTATAAATACGATTCCCGGTTCCCCCCTTTCCTCTTCAATAGCTCCACGGCAAATCTTCTAAAGGAAAAACTTCGCTCGCTGCATCTTCTCAATCTGAAGCCCCGCAGCAATCTCATCCATCCCACCGCTCAGCGTTTATCATTCCTTTCCCATTTCACCTTCAATCCGTCAATTCGCGTTTTGGAAAATAGGGCATTCTAGGATCTCGGCTATGGTGGCTGTGGGAAAAATCGGCGGCGCGATAGAAGGAGAGGAACGGATTCCGAAGGAGGCAAGGAGGATTCTTCATTCTCTGGCATCGGAATGGACGGATGTGGCTGATTCGAGGGCTTTGGAGGTTGTGCAACTCAAGGGGGCGTTGACGAACGAGGTCTTTCAGATTAATTGGAGGGCGGAAGGGAAGAGAGATAGGAAGGTTTTGGTCAGGATCTACGGGGAAGGGGTGGATGCGTTCTTTGATAGGCAAGATGAAATCCGGACGTTTGAGTTCATGTCGAGGCACGGGCAGGGGCCGCGATTGCTTGGGAGGTTCACAAATGGGCGCGTTGAAGAGTTCATTCATGCTAGGACTCTTTCGGCAGCTAACATGCGGGACCCGGAAGTAGCTGCGCTTATAGCGTCAAAGCTGAGGGAGTTTCACGAGCTGGACATGCCCGGGCCCAGGAAAGCTAATCTGTGGGACCGATTAAGAAACTGGCTCAAAACTGCCCAGGACTTGCTCTCTTCCTCCCCAGCTGCCTCCCAGGAACTTAATTTAGACGGCTTTGACGTTGAAATTGATAGTTTGGAAAAATCTTTATCAGGGGGCGCCCATAAGGTTGGGTTTTGCCACAACGATCTTCAGTACGGCAACATCATGATGGACGAGGACACCACGCAGATCACTATAATTGACTACGAGTATTCATGCTTCAACCCTGTGGCGTACGATATTGCTAATCACTTTTGTGAAATGGCTGCTGATTACCACTCGGACGCCCCTCATAATCTTGACTACACTAAATACCCTGACCTTAAGGAGCGCACAACATTTGTTGAGATTTATCTGAAATCTTCAGGCGAGGAGGCAACCGAAGAGGAGATTGACAGTTTGGTCGAATCCGTAGAGCAGTATACCCTTGTGAGCCATCTAACCTGGGGTTTATGGGGCATAATTTCGGAACATGTGAATGAGATTGATTTTGATTACATGGAGTATGCGAGGCAAAGGTTTGAGCAGTACTGGTTGAAGAAGGCTGCTGCCGGCATTTTGGGATTTCACTGAAGTCTCCACTTCAGACCTGCTGCGCTTGTTTTATTACTGTATATTATTATATATACTGAATGATGCCCTGCCCTCTTTGGAGGCAGCTATAGCTTGCTTGATAATAAGATAGCTGCAGAATACCTTTTTAATTTCAACTTCTTTTGAATAGCACAACACATCTTCAGGTTCGGTGCATAAAACTCATGACAGATGTTAATTTTTTTGTTCAAACTGCACAATGCCATGGCTTTATTTTAACTGAATGTTAA

Network for GWHGAAEX006251

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01633.19	Choline_kinase	66	269	3.50E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14156	CHK	Metabolic pathways	map01100
K14156	CHK	Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.520
SRP064423	SRR2545915	Juvenile tuber	77.320
SRP108465	SRR5643513	five period of Gastrodia elata	91.670
	SRR5643514	five period of Gastrodia elata	156.020
	SRR5643515	five period of Gastrodia elata	170.160
	SRR5643524	five period of Gastrodia elata	164.770
	SRR5643525	five period of Gastrodia elata	91.510
	SRR5643528	five period of Gastrodia elata	72.410
	SRR5643658	five period of Gastrodia elata	87.610
	SRR5643659	five period of Gastrodia elata	45.520
	SRR5643660	five period of Gastrodia elata	34.380
	SRR5643661	five period of Gastrodia elata	49.910
	SRR5643662	five period of Gastrodia elata	51.200
	SRR5643663	five period of Gastrodia elata	36.550
	SRR5643664	five period of Gastrodia elata	32.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.980
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.290
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.460
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.800
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	38.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	85.830
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	84.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	62.850
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	62.850
SRP279888	Gastro	Gastrodia elata tuber	30.07
	Juven	Juvenile tuber	67.22
	Mother_Gastro	Mother tuber of Gastrodia elata	317.15
	Mother_Juven	Mother tuber of Juvenile	376.84