Detail information of GWHGAAEX006253/evm.TU.scaffold_179.46


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG01683.00E-06Putative ubiquitin fusion degradation protein
nrgi|743787826|ref|XP_010922508.1|6.63E-18PREDICTED: E3 ubiquitin-protein ligase UPL4 [Elaeis guineensis]
Swissprottr|Q9LYZ7|UPL4_ARATH5.00E-06E3 ubiquitin-protein ligase UPL4
trEMBLtr|A0A068UE27|A0A068UE27_COFCA1.00E-11Coffea canephora
TAIRAT5G02880_13.00E-06Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017411092661110081-
Transcript Sequence

Network for GWHGAAEX006253

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10590TRIP12 Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.790
SRR2545915Juvenile tuber1.450
SRP108465SRR5643513five period of Gastrodia elata2.430
SRR5643514five period of Gastrodia elata0.460
SRR5643515five period of Gastrodia elata0.560
SRR5643524five period of Gastrodia elata0.730
SRR5643525five period of Gastrodia elata1.730
SRR5643528five period of Gastrodia elata1.240
SRR5643658five period of Gastrodia elata0.700
SRR5643659five period of Gastrodia elata0.490
SRR5643660five period of Gastrodia elata0.000
SRR5643661five period of Gastrodia elata0.820
SRR5643662five period of Gastrodia elata0.000
SRR5643663five period of Gastrodia elata0.210
SRR5643664five period of Gastrodia elata1.510
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.000
SRR6049655Rhizomagastrodiae_C368-T10_good_13.060
SRR6049656Rhizomagastrodiae_C368-T07_good_10.000
SRR6049657Rhizomagastrodiae_C368-T07_good_11.510
SRR6049658Rhizomagastrodiae_C368-T04_good_10.610
SRR6049659Rhizomagastrodiae_C368-T04_good_11.790
SRR6049660Rhizomagastrodiae_C368-T01_good_10.810
SRR6049661Rhizomagastrodiae_C368-T04_good_11.660
SRR6049662Rhizomagastrodiae_C368-T01_good_10.250
SRR6049663Rhizomagastrodiae_C368-T01_good_10.980
SRR6049664Rhizomagastrodiae_C368-T10_good_10.230
SRR6049665Rhizomagastrodiae_C368-T10_good_10.230
SRP279888GastroGastrodia elata tuber 0.12
JuvenJuvenile tuber0.43
Mother_GastroMother tuber of Gastrodia elata 4.00
Mother_JuvenMother tuber of Juvenile 22.64