Gene detail

Detail information of GWHGAAEX006261/evm.TU.scaffold_179.54

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|343085920\|ref\|YP_004775215.1\|	3.00E-47	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
nr	gi\|743798866\|ref\|XP_010925340.1\|	0	PREDICTED: systemin receptor SR160 [Elaeis guineensis]
Swissprot	tr\|Q8L899\|BRI1_SOLPE	0	Systemin receptor SR160 (Precursor)
trEMBL	tr\|F6H4C0\|F6H4C0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47131.1}
TAIR	AT4G39400	0	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000174	1176275	1179932	-

Transcript Sequence
>GWHTAAEX006261 ATGGCCTCCTCTCTCCTCTTCCTATTTCTCCTCGCCCTCCTCCCCATGACTCCCGCCATCGTCGCAGATGACCTCAGCCTTCTCATCTCCTTCAAGCGCTCTCTCCCCAACGCTCAGCTCCTCTCTACATGGATCCCGGGAAACAACCCCTGCGCCTTCTTCGCCGGAGTATCCTGCATCAATGGCCGCGTCACCGGAGTGAATCTCGACTGCATTTCTCTCAACGCCGACTTCGGCTTCGTCTCCTCCACTCTTCTGGTCCTCGACCGCCTCGAATCCCTCTCCCTCCGCTTCTCCAACCTCTCCGGCAGCATCAGCAGAGCTTCCCGCTGCGGCGGCAGGATTTTCGATCTATCCCTCGCCGGAAATGGCCTCACGGGCTCCATCGCCGACGTTGCCTCCCTGGCCTCGCTCTGTCCTTCTCTCACATCCTTGAACCTTTCCGGCAACGCAGTTTCAGGCTCAGGCTCAGGCGTCTTCAGCCTCTCCGGTCTGGTGACGCTCGATCTCTCCTTCAACAGGATATCATCCATCGGCGACCTCAGGAGAATCTTGCTCGCCGGGCCCAACATCCGCTTTCTCGATCTCTCATCCAACGCTATTTACGGCAAGATCGGCGCCGGAGTTCTCGAAGGCTGCGGCCGACTCGCCGCTCTCAACCTCTCTTCGAACCATCTCGCCGGGCCCCTTTCCCGCGACATTTCCTTCTGCTCCTCTCTTCGAGCACTCAATCTCTCGAACAACAATTTCTCCGGCGAGATCCCCGTCGGAGCCCTATCCCAAATCCCTGATCTGAGGATCCTGCAGCTCTCCTTCAACGATTTCTCCGGCGAACTGCCCCGATCCATCCTCAATCTCAGCAAACTGGAAGTCTTTGATTTCAGTTCAAACGCCCTGTCGGGGTTCATTCCCCAGAGCTTCGGCAGCAGGCTGCTGAGGGAGATCCACCTGCAGAACAACCTGTTCTCCGGCCCTATTCCGGCGGCGCTGGGCAACTGCTCCAGCCTCATCTCCGTCGACCTCAGCTTCAACTACCTCACGGGAAAGATTCCTCCCTCCATCGCCTCCCTTCCTCATCTCCGGGACCTCATCATGTGGCAGAACCTTCTGGAAGGGGAGATTCCGGCAGATCTTGGCCGCACCGCCGCTCTGGAAAACCTTATCCTGGACAACAATGGCCTCTCCGGCTCTATCCCTTCCAGCCTCAGCAACTGCACCGACCTCAACTGGATCTCCCTCTCCAGCAACCGCTTCACCGGCGAGATACCCTCCTGGATCGGCCGGCTGGAGAATCTCGCCATTCTCAAGCTGGGAAACAACTCCTTCTCCGGCACCGTTCCGCCAGAGCTCGGGGACTGCAAGAGCCTCATATGGCTCGATCTGAACAGCAACCGCCTGGTCGGCGCCATCCCTCCCGCCCTATCAAAGCAATCCGGCAGCATCGCCGTTGGGCTCGTCACCGGGAAGCGGTTCGTCTACCTCAAGAACGACGGGAGCAAGGAATGCCGCGGCGCTGGGAACCTCCTTGAGTTCGCCGGAATCCGCCCGGAGCAGCTCAGCAGGCTGCCCAGCCATCCCTGCAACTTCACCAGAGTGTACGTTGGGAGCACCAGGTACACTTTTAACAAGAAGGGCTCCATGATTTTTCTAGATCTGTCCTACAATGACCTCTCTGGCGAAATCCCCAAAGAGCTGGGCAGCATGTACTATCTCATGGTGTTGAATCTGGGGCACAACATGCTTTCCGGCCCGATTCCGGCGGAGCTGGGCAGCCTGAGATACGCCGCCGTGTTCGACCTGTCGCATAATTATCTGGAGGGCTCCATTCCGGCGAGCTTGGGCAGCCTCTCCATGCTCTCGGAAATCGATCTGTCCAACAACAAGCTCGTGGGGAGGATCCCCGAGTCCGGCCAGCTGGTCACATTCCCGAGCTACAGATACGAGAACAACTCCGGGCTCTGCGGCCTGCCTCTCCCTTCCTGCGATCGAATCTCCTCCCTGAGCTCCGGCAACGGAGAGCAGAGGTCGCGCCGCCGGCAGGCCTCCATCGCAGGCAGCGTGTCCCTGGGGCTCCTCTTCTCCGCTCTCTGCTTGGCGGCCATCGTCCTCGTCGCCGTGGGGGGAAAGAAGCGGAGGCGGAAGGCGGCGAAGGACTGCGGCGGCGGCGCCACGAGGGACATCTACATCGACAGCATCTCCCATTCTTCGGCCCCTGCCTGGAAGTTGACCGGCGGCACCAAGGAAGCTCTCAGCATCAGCCTGGCTGCGTTTGACAAGCCTCTCAGAAAGCTCACTTTCGCGGACCTGGTGGAGGCCACCAATGGCTTCCACGACAGCAGCATGATCGGCTCCGGTGGCTTTGGCGACGTCTACAGGGCCCAGTTGAAGGACGGCAGCGTCGTTGCCGTCAAGAAGCTGATACACATCAGCGGGCAGGGAGACCGGGAGTTCATGGCGGAGATGGAGACCATCGGGAAGATCAAGCACCGGAACCTCGTCCCCCTGCTGGGCTACTGCCGGGTCGGCGAGGAGCGGCTTCTGGTCTACGAGTACATGAAGCACGGAAGCCTGGAGGACGTCCTGCACGGCGGCGGAAAGAGGTCTGCCAGGACGAGGCTGGGCTGGCCGGCGAGGAGGAAGATCGCGATCGGGGCAGCGAGAGGCCTCGCGTTCCTCCACCACAGCTGCATTCCCCACATCATCCACCGGGACATGAAGTCGAGCAACGTGCTCCTTGACGAGAACCACGAGGCCAGGGTCTCCGATTTTGGGATGGCAAGGTTCGTGAGCGCGATGGACACCCACCTGAGCGTGTCGACGCTCGCCGGCACTCCAGGCTACGTCCCGCCGGAGTACTACCAGAGCTTCCGCTGCACGACGAAGGGGGACGTGTACAGCTACGGCGTCGTGCTGCTGGAGCTGCTCACCGGGAAGCCGCCGACGGACTCGGCCGACTTTGGCGACAACAACAACCTTGTGGGATGGGCCAAGCAGCACTCCAAGCTGCGGGTCAGCGACGTGTTCGACCCTGATCTCCTGAGGGACGAGCCCGGGATCGAACTCGAGCTCCTCCAGCACCTCAAGATAGCCTGTGCGTGCCTGGACGAGCGGCCCATGCGCAGGCCCACGATGCTGAGGGTGATGGCCATGTTCAAGGAGGTCCAGCCCGCCGCCGGTTCCGCCGCCGCCGCCGATGGGCTCGCGGCTGCTGATGATATGACCCTGAAGGAGGGGAAGGAGGACAGGGATTAACCTCTAGGGCGCAAGTCGTATTCTTACCCACCACACTAGGTAATTGCAATTCAGTAACGACTGTATTTTTCTTTTTATTTATTTATTTAATTTTTTTGTTTAATATAAATGCAGTTATTGTAACATATTTCTTTGTAGGAATGCATATTTCATAAATGCTATTCTTATAAACATGTTTAATGGATAATCGCCGGCCGATTCGGTCAAACGAAGTCAATGCTTTTCCCGCAAAGTTCGAAATAGATCATTTTTATCGGTTATATTTATATTTCAATTTGCTCAATATATTTTTGAATGTATAACGATAATATTTTTGAATAAAAAAAGCACTTTTGACAGTACACTTTATTATTATTGGCTTTTATAGGTGCGGGGAGTGGACTGCACACATGCAACTTAGATTCCT

Network for GWHGAAEX006261

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.11	LRRNT_2	22	59	0.00013
PF13516.5	LRR_6	139	156	0.13
PF13516.5	LRR_6	237	253	0.38
PF13855.5	LRR_8	408	466	2.80E-07
PF00069.24	Pkinase	776	1048	2.10E-45

Protein Sequence

>GWHPAAEX006261
MASSLLFLFLLALLPMTPAIVADDLSLLISFKRSLPNAQLLSTWIPGNNPCAFFAGVSCINGRVTGVNLDCISLNADFGFVSSTLLVLDRLESLSLRFSNLSGSISRASRCGGRIFDLSLAGNGLTGSIADVASLASLCPSLTSLNLSGNAVSGSGSGVFSLSGLVTLDLSFNRISSIGDLRRILLAGPNIRFLDLSSNAIYGKIGAGVLEGCGRLAALNLSSNHLAGPLSRDISFCSSLRALNLSNNNFSGEIPVGALSQIPDLRILQLSFNDFSGELPRSILNLSKLEVFDFSSNALSGFIPQSFGSRLLREIHLQNNLFSGPIPAALGNCSSLISVDLSFNYLTGKIPPSIASLPHLRDLIMWQNLLEGEIPADLGRTAALENLILDNNGLSGSIPSSLSNCTDLNWISLSSNRFTGEIPSWIGRLENLAILKLGNNSFSGTVPPELGDCKSLIWLDLNSNRLVGAIPPALSKQSGSIAVGLVTGKRFVYLKNDGSKECRGAGNLLEFAGIRPEQLSRLPSHPCNFTRVYVGSTRYTFNKKGSMIFLDLSYNDLSGEIPKELGSMYYLMVLNLGHNMLSGPIPAELGSLRYAAVFDLSHNYLEGSIPASLGSLSMLSEIDLSNNKLVGRIPESGQLVTFPSYRYENNSGLCGLPLPSCDRISSLSSGNGEQRSRRRQASIAGSVSLGLLFSALCLAAIVLVAVGGKKRRRKAAKDCGGGATRDIYIDSISHSSAPAWKLTGGTKEALSISLAAFDKPLRKLTFADLVEATNGFHDSSMIGSGGFGDVYRAQLKDGSVVAVKKLIHISGQGDREFMAEMETIGKIKHRNLVPLLGYCRVGEERLLVYEYMKHGSLEDVLHGGGKRSARTRLGWPARRKIAIGAARGLAFLHHSCIPHIIHRDMKSSNVLLDENHEARVSDFGMARFVSAMDTHLSVSTLAGTPGYVPPEYYQSFRCTTKGDVYSYGVVLLELLTGKPPTDSADFGDNNNLVGWAKQHSKLRVSDVFDPDLLRDEPGIELELLQHLKIACACLDERPMRRPTMLRVMAMFKEVQPAAGSAAAADGLAAADDMTLKEGKEDRD

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xb-1

KEGG pathway

KO	Enzyme	pathway	mapID
K13415	BRI1	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005515	Molecular Function	protein binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.130
SRP064423	SRR2545915	Juvenile tuber	8.500
SRP108465	SRR5643513	five period of Gastrodia elata	9.030
	SRR5643514	five period of Gastrodia elata	12.160
	SRR5643515	five period of Gastrodia elata	10.360
	SRR5643524	five period of Gastrodia elata	10.910
	SRR5643525	five period of Gastrodia elata	24.440
	SRR5643528	five period of Gastrodia elata	7.990
	SRR5643658	five period of Gastrodia elata	16.070
	SRR5643659	five period of Gastrodia elata	9.680
	SRR5643660	five period of Gastrodia elata	10.490
	SRR5643661	five period of Gastrodia elata	7.040
	SRR5643662	five period of Gastrodia elata	6.910
	SRR5643663	five period of Gastrodia elata	8.540
	SRR5643664	five period of Gastrodia elata	6.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	23.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	26.160
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	35.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.640
SRP279888	Gastro	Gastrodia elata tuber	9.03
	Juven	Juvenile tuber	33.75
	Mother_Gastro	Mother tuber of Gastrodia elata	11.52
	Mother_Juven	Mother tuber of Juvenile	15.32