Gene detail

Detail information of GWHGAAEX006263/evm.TU.scaffold_179.57

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4646	2.00E-93	Uncharacterized conserved protein, contains ARM repeats
nr	gi\|514817694\|ref\|XP_004983562.1\|	9.60E-104	PREDICTED: armadillo repeat-containing protein 7-like [Setaria italica]
trEMBL	tr\|K4AFT4\|K4AFT4_SETIT	4.00E-104	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si037741m}
TAIR	AT5G37290	2.00E-93	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000174	1224345	1255813	-

Transcript Sequence
>GWHTAAEX006263 GGACCTTCGTACCTTCTGATTTTGTCTCCGGCGGCGTCGAATGGGACCTCAGCACCTTCGCCGAATCATCGAATCGGAGAACCTCGCAGCTCGCAGCTTCGTCTTCGCACGATTCGGAGAACTTCCTTTTTCTCGTTGAGCAGCCACCGATATTTTCTATTTCATTTCCGACTACAATACCGCAAAGGCATCTAAGGTCCAAGTTAGCTCGCTGCCTCCTCTTCCTCTTATAAGCTGTCGGGATCTTCTTTGTCAGCAATGTTCACCAATGAGCAGCGACAACAGGAACGAACAGGGAAGTACGGCACTCCAAGGCTGCAGTATCTGCAGGAGCTTGTAACTCAGTTTCAAGTTGCAACTAATGAAGAATCAAAAGAGAGAATTGTAGCCAATTTGGCTAACTTTGCATATGATCCTTACAACTATATGTTCCTTCGACAGCTCAATGTTTTGGAGCTATTTCTGGATTGCGTTACAGAAGAGAATGAAAAACTTATTGAGTTTGGTATCGGTGGGATATGTAACTCATGCGTTGATCCTACAAATACTGCCGTCATAGTTCAGTGTGGTGGTATTCCTTTGGTTATTCAGTGTTTAACAAGCCCTGTAAGAAACACGGTGACTTATGCTCTTGGAGCATTATATTACCTCTGTAATTCACAAACTAAAGAAGAGATATTAAAGCCTGAAGTAGTTAAAGTCATGAGGAACTATGCTGCAGTTGGTGCTGTTAATACCTGTTTCAGTAACCTGGCCAATGCATTTCTAACAAAGCACATCAACAGCCCCCCCTGAGGTTTGTACTATGAAACTCTCGTCAGTACTTTACAAATATCTCCTTACATATAACTTTCTGTTGTTATACTCTATTTCCTTATTTTAAGTGAATTTTTTCCATCTGCTATTTATTATGCTAAATCTTCAAAATTGTAAAGAAAACACAGATTGTGGTGCGAATAAATCAATGGAATTTTGTTCCTAAAGTTTAATACTCTTTCCTGGTTTATTGATGATTTATTTGTCGGATATGTTATACAAATACTAGTGGAACTTAGGTAGTGTGATACTAGCTTTTTTTGTTGGATATTGCACAATCTTTCAAATTCAAATGCAATCGAATGATCAGCTTATTGTTATATTGCTATAGCTTTTGGTCTCGAAAATGTTGATCCTACTTATTGGACTCAGATCAAACCAAATATTGACAATAAAAATTACTAAATAGATGCCACATATTTATGGGACGAGGTATGGTATGGGGATGTTTGGTTGTAGGATTTAGGCAAGATTTAATAATGCAAATCCTCAAATTTGTCAAACGCTATTCAGTGCAGTGATGAGATTTAGCATGAATCCAAATCTGTTATGGCTTTCAATCCCCACAGTTATGAAGAAAAAAACTTAATTGTGTAAATTCTGAAATTCTCAAATTTGTAGGATTTAGTAAGAAGATTACAAAGTGAATAGTATTATAGTCTAGTGGTTAAGATTTATGATTTATTGTCAATTGTCATAAGTTCAAGCCCTATCAATCACATATTTACATTATTTAAAACTCTCTTAAAAAAAAGATCGCAAAACTTTTCAAGTAGGTCAAAAAAAATTAAAAAATTAAAGAATTAAAGCCCTTTCTCTTCCTGTCTTCTTTGTTATTGGTCTGATCTTTCCCATCAAATCTCTCTTTTGGCATGGATCTCTCTTGCCATTCCCAACTCTCTCTTGAGAACTCACCATTTTAAAAGCCTATTAATATTACATTTTTTATGGAATTTCAAATGTATTTATATAATAACAGTCATATTGATAATTTATTGATACTAAATTAAAAAAATCAGTTACTTTACTTGATTCAAAATGCTAAATTAATGTTCCCCTTATTTGGCAAAATTAGTTTTTATATCGCTTTTCCAAGTTGTCATTAGGCTGCAATTAGTTTCTCCCCAAAACTGCGACCTCTGATCTCTAATGGCCCCCTTTTTCCATCTATTGTAATTGGCTGAAAAAATTCCATGAAATGTGACGTAATCTGTCGTTCTTAACTGAGGAAATACGTATAATTTTCTGAAGGATTTCATACTTACCATTTTAAGGCTTTCTTATTAACATATCTGACATCCGATACCATCAAATGATATAATTACACCACCCCCACTTAACCAATAACAATTCTTTGCAAGAAGAATAGATTTCTAACATGAATTGTGATTAGGTGTAGTGTTGTTAATATTGGAAGTTGAGCATTAGATTAACGCAAGTAATCATCTCTATCACTGTACTTCTTTTTTATTAGCGGTAGACTTTGAATAACTCACACCTATTAGCAAATCTAATGTATGGATAGCATTAGTATTTACTGTAAATCTACTTGCAAAATTATCAATGGCAATATGTTAATTTAGTTCACATTTTGAAGTAATGCGGTAGTTCCAAAATCAATTTTAATGCATCAATCCCAACCTAAATTGATTACCCACCATCCATCCTTCTTCATCAATCAAACTCCTAAAATCTCTCTTTTATAAGCACATTAGTTCCTCGTCGACTTACTCTTTATGATCATTCATTCGCTTATTCCTAAAATTTATGCCAATGAAGCTATTCACTATGTTGGCTTTGCTATCTTCTTATTTCATCAATTCTCATGCACTTCTCTAAAGCTCAAACACCTGCTGGCTTGCCAACTCAACCTCCCCCGCTGTCAGGCCTCACGTCTTCACCCATAATGACACCGACACCACCACCATTGCCGCTTGCAACACTGCCGTTGGCACTGCCACCCCCATCACTGCAACCTGCACCACAACCAGTCGCATTAGCCCCAGCTATGCCTCCTCCAGTTTTGCCTCCATCGACATTGCCTCCGATCAAATCACCAGTCTTGCCTCCAGATGCAACACCAATGATGGATCCACCAGTGCTGCCGCCAGTGCTGGCACCTGCTCCAACTCCTACCATAAATGTGCCGCCTGCTCTGGCACCGACAAAGGGAAGGAAGAAGCATAAGAAGAGAATGCACGGCATGAAGAATGTGAGAGAACGTTGCTGGCATTTCTTTTGCTGTTTTGTTGCAGTTTTCAGTTAGAGTTCATCTATTTCAGCATATGAATATTTTATTTCATCCTTGTCTGAGAGACAAAAGGGCTCAATTTTCATAATTATTACTGTTTAGAACACTTCTGATTTGTAATACATAGAGAATAAGGAATTTCAGCATTTGAAATTCATGCCAATGTTTATATTATACGCCAAAAAAGAAATAAAGCAATGATGCATTGTTCCCAA

Network for GWHGAAEX006263

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00514.22	Arm	96	132	8.10E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.730
SRP064423	SRR2545915	Juvenile tuber	6.490
SRP108465	SRR5643513	five period of Gastrodia elata	13.260
	SRR5643514	five period of Gastrodia elata	17.600
	SRR5643515	five period of Gastrodia elata	17.440
	SRR5643524	five period of Gastrodia elata	19.760
	SRR5643525	five period of Gastrodia elata	16.480
	SRR5643528	five period of Gastrodia elata	25.590
	SRR5643658	five period of Gastrodia elata	15.350
	SRR5643659	five period of Gastrodia elata	19.440
	SRR5643660	five period of Gastrodia elata	22.530
	SRR5643661	five period of Gastrodia elata	20.890
	SRR5643662	five period of Gastrodia elata	15.330
	SRR5643663	five period of Gastrodia elata	15.960
	SRR5643664	five period of Gastrodia elata	11.400
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.230
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.890
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.280
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.540
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.910
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.910
SRP279888	Gastro	Gastrodia elata tuber	10.04
	Juven	Juvenile tuber	9.79
	Mother_Gastro	Mother tuber of Gastrodia elata	22.31
	Mother_Juven	Mother tuber of Juvenile	19.35