Detail information of GWHGAAEX006274/evm.TU.scaffold_179.69
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|573925811|ref|XP_006650444.1| | 1.29E-11 | PREDICTED: probable linoleate 9S-lipoxygenase 4-like [Oryza brachyantha] |
| Swissprot | tr|Q53RB0|LOX4_ORYSJ | 7.00E-13 | Probable linoleate 9S-lipoxygenase 4 |
| trEMBL | tr|M0WVM5|M0WVM5_HORVD | 2.00E-12 | Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_55029.3} |
| TAIR | AT1G55020 | 7.00E-12 | lipoxygenase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000174 | 1733419 | 1734062 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006274
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00305.18 | Lipoxygenase | 2 | 52 | 6.60E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15718 | LOX1_5 | Linoleic acid metabolism | map00591 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016702 | Molecular Function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.150 |
| SRR2545915 | Juvenile tuber | 0.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.130 | |
| SRR5643515 | five period of Gastrodia elata | 0.150 | |
| SRR5643524 | five period of Gastrodia elata | 0.270 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.670 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.810 | |
| SRR5643660 | five period of Gastrodia elata | 0.300 | |
| SRR5643661 | five period of Gastrodia elata | 0.750 | |
| SRR5643662 | five period of Gastrodia elata | 0.750 | |
| SRR5643663 | five period of Gastrodia elata | 0.560 | |
| SRR5643664 | five period of Gastrodia elata | 0.410 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.22 | |
| Mother_Juven | Mother tuber of Juvenile | 0.90 |