Detail information of GWHGAAEX006275/evm.TU.scaffold_179.70
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743830998|ref|XP_010934565.1| | 0 | PREDICTED: probable linoleate 9S-lipoxygenase 5 [Elaeis guineensis] |
| Swissprot | tr|Q43191|LOX15_SOLTU | 0 | Probable linoleate 9S-lipoxygenase 5 |
| trEMBL | tr|M0U1N2|M0U1N2_MUSAM | 0 | Lipoxygenase {ECO:0000256|RuleBase:RU003975} |
| TAIR | AT1G55020 | 0 | lipoxygenase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000174 | 1734079 | 1737864 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006275
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01477.22 | PLAT | 57 | 158 | 9.80E-12 |
| PF00305.18 | Lipoxygenase | 172 | 845 | 7.80E-297 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15718 | LOX1_5 | Linoleic acid metabolism | map00591 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016702 | Molecular Function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| GO:0005515 | Molecular Function | protein binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 259.310 |
| SRR2545915 | Juvenile tuber | 1137.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1527.740 |
| SRR5643514 | five period of Gastrodia elata | 941.700 | |
| SRR5643515 | five period of Gastrodia elata | 1875.540 | |
| SRR5643524 | five period of Gastrodia elata | 1676.990 | |
| SRR5643525 | five period of Gastrodia elata | 49.260 | |
| SRR5643528 | five period of Gastrodia elata | 151.490 | |
| SRR5643658 | five period of Gastrodia elata | 104.710 | |
| SRR5643659 | five period of Gastrodia elata | 2086.520 | |
| SRR5643660 | five period of Gastrodia elata | 1660.000 | |
| SRR5643661 | five period of Gastrodia elata | 2733.620 | |
| SRR5643662 | five period of Gastrodia elata | 1579.610 | |
| SRR5643663 | five period of Gastrodia elata | 2323.530 | |
| SRR5643664 | five period of Gastrodia elata | 1204.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1023.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 949.080 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 806.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 822.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 454.290 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 300.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 406.920 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 763.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 562.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 377.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 975.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 975.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 360.83 |
| Juven | Juvenile tuber | 107.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 197.02 | |
| Mother_Juven | Mother tuber of Juvenile | 126.12 |