Detail information of GWHGAAEX006278/evm.TU.scaffold_18.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|148557148|ref|YP_001264730.1| | 1.00E-31 | 2OG-Fe(II) oxygenase [Sphingomonas wittichii RW1] |
| KOG | KOG0143 | 3.00E-98 | Iron/ascorbate family oxidoreductases |
| nr | gi|595847275|ref|XP_007209291.1| | 2.08E-123 | hypothetical protein PRUPE_ppa007716mg [Prunus persica] |
| Swissprot | tr|A2A1A0|NCS1_COPJA | 2.00E-107 | S-norcoclaurine synthase 1 |
| trEMBL | tr|M5WUP4|M5WUP4_PRUPE | 8.00E-124 | Uncharacterized protein {ECO:0000313|EMBL:EMJ10490.1} |
| TAIR | AT1G78550 | 3.00E-98 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000015 | 49107 | 81236 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006278
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14226.5 | DIOX_N | 57 | 167 | 5.50E-25 |
| PF03171.19 | 2OG-FeII_Oxy | 217 | 314 | 2.00E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 79.890 |
| SRR2545915 | Juvenile tuber | 81.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 42.800 |
| SRR5643514 | five period of Gastrodia elata | 43.490 | |
| SRR5643515 | five period of Gastrodia elata | 39.330 | |
| SRR5643524 | five period of Gastrodia elata | 46.030 | |
| SRR5643525 | five period of Gastrodia elata | 76.270 | |
| SRR5643528 | five period of Gastrodia elata | 78.940 | |
| SRR5643658 | five period of Gastrodia elata | 74.350 | |
| SRR5643659 | five period of Gastrodia elata | 23.270 | |
| SRR5643660 | five period of Gastrodia elata | 23.020 | |
| SRR5643661 | five period of Gastrodia elata | 24.850 | |
| SRR5643662 | five period of Gastrodia elata | 18.450 | |
| SRR5643663 | five period of Gastrodia elata | 22.960 | |
| SRR5643664 | five period of Gastrodia elata | 18.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 25.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.390 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.230 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.490 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.060 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.060 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 33.22 |
| Juven | Juvenile tuber | 31.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 56.59 | |
| Mother_Juven | Mother tuber of Juvenile | 41.18 |