Detail information of GWHGAAEX006295/evm.TU.scaffold_18.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|14600463|ref|NP_146978.1| | 9.00E-47 | DNA repair and recombination protein RadA [Aeropyrum pernix K1] |
| KOG | KOG1434 | 1.00E-119 | Meiotic recombination protein Dmc1 |
| nr | gi|743852704|ref|XP_010940454.1| | 5.97E-161 | PREDICTED: DNA repair protein RAD51 homolog 3 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q8GXF0|RA51C_ARATH | 3.00E-132 | DNA repair protein RAD51 homolog 3 |
| trEMBL | tr|M1A9Z5|M1A9Z5_SOLTU | 2.00E-149 | Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400018063} |
| TAIR | AT2G45280 | 1.00E-119 | RAS associated with diabetes protein 51C |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000015 | 956199 | 1024508 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006295
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08423.10 | Rad51 | 71 | 335 | 3.90E-48 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10870 | RAD51L2, RAD51C | Homologous recombination | map03440 |
| Fanconi anemia pathway | map03460 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0008094 | Molecular Function | DNA-dependent ATPase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.860 |
| SRR2545915 | Juvenile tuber | 15.110 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.700 |
| SRR5643514 | five period of Gastrodia elata | 9.400 | |
| SRR5643515 | five period of Gastrodia elata | 8.640 | |
| SRR5643524 | five period of Gastrodia elata | 9.560 | |
| SRR5643525 | five period of Gastrodia elata | 7.680 | |
| SRR5643528 | five period of Gastrodia elata | 6.550 | |
| SRR5643658 | five period of Gastrodia elata | 5.280 | |
| SRR5643659 | five period of Gastrodia elata | 11.580 | |
| SRR5643660 | five period of Gastrodia elata | 9.640 | |
| SRR5643661 | five period of Gastrodia elata | 10.230 | |
| SRR5643662 | five period of Gastrodia elata | 6.410 | |
| SRR5643663 | five period of Gastrodia elata | 9.130 | |
| SRR5643664 | five period of Gastrodia elata | 7.530 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.93 |
| Juven | Juvenile tuber | 14.98 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.79 | |
| Mother_Juven | Mother tuber of Juvenile | 8.35 |