Gene detail

Detail information of GWHGAAEX006301/evm.TU.scaffold_18.32

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743778544\|ref\|XP_010919736.1\|	3.11E-70	PREDICTED: protein REVEILLE 6-like [Elaeis guineensis]
Swissprot	tr\|Q8S9H7\|DIV_ANTMA	8.00E-35	Transcription factor DIVARICATA
trEMBL	tr\|D6MKL4\|D6MKL4_9ASPA	2.00E-67	Transcription factor {ECO:0000313\|EMBL:ADG58061.1} (Fragment)
TAIR	AT5G47390	6.00E-38	myb-like transcription factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000015	1160529	1167672	+

Transcript Sequence
>GWHTAAEX006301 GTCTTAAGCGGGAAGTTGGGAATGGTATAAGAATTAGCACTAATCAGAGACGAGAGAGCCTCACACTAAATTCCGTATGATTAGAGTTTTGACAGGCGGCAGCAATCATCGGTTATTCTCACACAGGAAGCTGCCCGTGTTCGTTCATTTTACCTCATGCTTAGCTTAGCTTTTCCTTATGTTCGAGGGTAATTTCGGCATTTTCGCACAATCTCGTTGGCATTTTGCCCATTGCGGATACGGATATAACCAAATCCGAAAGCAAGAGCACTAACTACGGCTCTCCGCTGATTTATCATTTATTTCCTCGTCTCCGAGGACGAAGAAAGCGAAAATAGAGAGACAGAGGGAGAAGAGGGAGATTAGCCAGAGATGGAGGAAAAGGGATTGAAGCTCTTCGGTGTAAGGATCGTGGATTGTGATAGATGGAGGGAAGAAGAGACGGAGCCGAATTGGAAGGGAGAGGAGAAGGAACGCACGATGAAAAAAGGTATGTTGAAGAGCAAGAGCATGGGGAGCCTGATGGCGTGCGGCGTGACCTCATCTGAGGATCATGGAGCTGGCGATGGCGGGTATGTATCCGATGGTGGACTGCCGCAATCATCGAGAAGGAGAGAAGGTCAGGAAAGGAAGCGAGGGGTGCCATGGACTGAAGAGGAACATCGAACTTTTTTAGCTGGACTGGAAAAGCTCGGGAAGGGCGACTGGAGGGGGATCTCAAGAAATTTTGTGTTGACCAGAACGCCGACTCAAGTAGCCAGCCATGCCCAGAAATATTTCCTTAGGCAGAGCAATCCCAACAAGAAGAAGAGGAGATCCAGTCTTTTTGATGTGGTTTTCAGTAACAAAACCATAAATTCCGAGTCTCCCCCAACTTCACCATTGAAGAAACCTGATGAAACATTTGAGGCGATGGATACTCTCAGCCACGATAACCATTCACTGCAGGCTGCTTCCTCATTCTTCACTTTATTCCAAAAGAACTCGCCTGGTTCAGGAAGTTGCAGTAGCAGCCATAATCTCCTCAATAGCAGCTCAATGGACTTAGATCCCCAGACCTTATCCCTAACCTCAGCACTTGCTGCTCGGGATCCACCAGCTGCAAGTTTCCTCAAATTATCCTTACCTCCCTGCGCTCCCCAAACACTGGCTAATTCTGCGATTGGGAATAATGATTTGGAGCTCAGCATAGCGCCTCCACAGTCTCATAGTAACTTGGCGACACTGTCCTCAGGCACTATAAGAGTCATCTAATCATCATTTGCATGCTTCCATCTTGGAAACAAGCTTAGAAATTTTATTTTTTATTTTTTTGGGTTTAGTAAAATCAGGCTATGTTTAATTAATTGCTATAAACTTTTTAATAACTCAACTCTATTCCCTATCTCTACGGATCAGCAGTTAAAAAGGTCTTGCTCTTGCTTTTATGATGGCAGCGACCAGAATTGTTAATTAAAATTTATGATTAGTAAAATTATGTAGATGAAATTTGTTATGTTTTAAATCTTTTCTGCATAAGCGCCGTTTTTTAAAATATGAAGGTTTTTGTTCTTGTTTTTTCTTGAGAATTCATGTTCCAGGACAAGTGCTGGTAATGCTTTCTCAGGTTGATAAACCTCGAATTGATCTGCACACAAAGCATGCCACCAAGTAAGCTGCATTCGGTCCAATACCCAATGACTGTCTAGCCTGTGCAGGCTTGCCACTCTCAAATCCTCCAAGTAAAAGAGACCTACAAAGTGGAAGGGCTGATCTCAAGACTTATCTAAATGATATATAGATTGCCCATTGCCCATGCTCCACAAGGCATGCTTTTGAACAACACTCTGTCCCCTTACAAATGATATGACAGAGAATCGAGTCATTGTGTTTGATATAAAAGTTCCTTACCTACTGATGAATGACGTACTCTGACCATTAGCAGAAGATATCGTGTTAGCCTATTTGGATGAAATAATCATCTATAGTTTGTGTAAAAATTGCATTTGTAACTTTTGGATCTATTATGGATGAGTAACTAATTCAAC

Network for GWHGAAEX006301

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	91	135	7.00E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.890
SRP064423	SRR2545915	Juvenile tuber	24.720
SRP108465	SRR5643513	five period of Gastrodia elata	28.090
	SRR5643514	five period of Gastrodia elata	31.060
	SRR5643515	five period of Gastrodia elata	30.250
	SRR5643524	five period of Gastrodia elata	31.460
	SRR5643525	five period of Gastrodia elata	40.240
	SRR5643528	five period of Gastrodia elata	38.500
	SRR5643658	five period of Gastrodia elata	38.140
	SRR5643659	five period of Gastrodia elata	23.070
	SRR5643660	five period of Gastrodia elata	23.770
	SRR5643661	five period of Gastrodia elata	23.840
	SRR5643662	five period of Gastrodia elata	22.890
	SRR5643663	five period of Gastrodia elata	22.620
	SRR5643664	five period of Gastrodia elata	24.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.430
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.940
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	26.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.430
SRP279888	Gastro	Gastrodia elata tuber	16.27
	Juven	Juvenile tuber	23.20
	Mother_Gastro	Mother tuber of Gastrodia elata	44.35
	Mother_Juven	Mother tuber of Juvenile	33.27