Gene detail

Detail information of GWHGAAEX006304/evm.TU.scaffold_18.35

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428208839\|ref\|YP_007093192.1\|	2.00E-36	glucose-methanol-choline oxidoreductase [Chroococcidiopsis thermalis PCC 7203]
KOG	KOG1238	0	Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family)
nr	gi\|743777532\|ref\|XP_010919202.1\|	0	PREDICTED: protein HOTHEAD-like [Elaeis guineensis]
Swissprot	tr\|Q9S746\|HTH_ARATH	0	Protein HOTHEAD (Precursor)
trEMBL	tr\|U5DDA7\|U5DDA7_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN19412.1}
TAIR	AT1G12570	0	Glucose-methanol-choline (GMC) oxidoreductase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000015	1592057	1595002	+

Transcript Sequence
>GWHTAAEX006304 TAAGAACAGCTCAAGAGATGCTGCGTTGGCTTTTGCTGATTCTCTGCAGCGTCGGTTATTGCCGGTCAGAATCAGGTCCGAAGTACACGTTCGTGAAGGAAGCAAGCGAGGCCCCAGCGGTGTCTGAGTACGACTACATCATCGTGGGGGGAGGGACGGCCGGCTGCCCTCTGGCGGCCACGCTCTCGCAGAACTTCACCGTGCTGGTGCTGGAGCGCGGAGGCACACCGTACGGCAACCCGAACATAACCAACCTGGCCTCGTTCGCGGACACGCTGGCGGACCTGTCGCCGGCGTCGGCATCTCAGCAGTTCGTGTCGGAGGATGGGGTCATCAATGCCAGGGCAAGGGTGCTGGGCGGAGGCACCTGCCTCAACGCGGGTTTCTACACTCGGGCTAGCCAAGACTATGTGCGGCACGCCGGCTGGGCCGATGCTCGCCTCGTCAGCCAGTCCTACGAGTGGGTGGAGCGCCTCATCGTTTTTGAGCCGCGCATGCTGCAGTGGCAGTCCGCAGTCCGGGACGGTCTGCTCGAGTCCGGTGTAGCCCCCAACAATGGATTCACCTACGATCACATCATCGGAACCAAGGTCGGGGGGACCATCTTCGACAGGGAAGGACATCGGCACACGGCAGCGGACTTGTTGGAGTACGCAGACGCAGGGAAGCTGACGGTACTCCTGCGGGCGACGGCATTGAGGATACTCTGGAAGACGGCCTCATTGAAGTGGGGGAAGAAGAGGCCAGCGGCGTACGGAGTGATCTATAGGGATGAGACGGGGAAGGAGAAGAAGGCGTATGTCAGGAGAGGGGGCGAAGTGGTGGTGGCGGCGGGGGCAATCGGAAGCCCGCAGCTGCTGATGCTGAGCGGGGTGGGTCCCGTACAGGAGTTGGAAAGGATGGGGATAGAGCTGGTGCTCAATCAACCGTTTGTTGGGAAAGGGATGGCGGATAACCCAATGAATGCCATCTTCGTGCCGTCCCCCAACCCGGTGGAGACCTCGCTGATAGAGGTGGTCGGGATTACCAGGTTCGGAACTTACATTGAGGCCGCCAGCGGGCACTTCTTCGCTTCCATTACAGGCGGCCGTCCTTCGCCGGCCCTGAACCCCACAAACTTCGGCATTTTTTCTCCTCTGACGGGCCAGCTGTCCACTATCCCGGCAGAAGCCATTGAGGGTGCTGCGGACCAATCAGCCTTTCGCGGCGGGTTCATTCTGGAGAAGATAATCGGACCGCTCTCCACGGGCCACCTCCAACTAAAAACCCTCAACCCCGACGACAACCCTTCCGTCACCTTCAACTACTTCAGTGATCCGTTGGACCTGCGGAGGTGCGTCGAGGGCGTCAAGACCATCGAGAATGTCATACAGTCCAACGCGTTCTCCAAGTTCAGGTACCCTTTCATCTCTATCGAGGCCCTGATTAACATGACGGTGAACTTCCCGATGAATTTGCTGCCGAAGCACGGCAACGATTCCACTTCGCTAGACCAATTCTGCAAGGACACTGTGATGACCATTTGGCATTACCATGGCGGCTGCCAGGTCGGAACCGTTGTTTCTAATGACTACAGAGTCATCGGGGTTGATGCCCTGAGGGTGATCGACGGCTCCACCTTCAAATTTTCGCCAGGGACCAATCCGCAGGCAACGGTCATGATGCTCGGAAGGTACATGGGCGTTCAGATCTTGAACGAGAGGCTGCGCACCCGCTGATATCTATTCTAGAATTGAGAGTTCGAATGACATTCTTCGCCCTCTCTTTTCGTGCTTGCTCTGTGAAACACATTCTTCGATTAATCTGTTATCTGAAAATTAATACTCACTCTCAACTGAATAAAGAATGGAAAAATATTTGATTATTTGGTATATGCCCTCATTGGCTTCAAATCACGTATTATTACATTGTCATGATGGCAGTATGATTGTTGCCAAAGTAGTTGGAACTCAAGCCAACTCATTGGCTTTTAAACAATACATTTATTACCTCAAAGTACGCTGCTGCTAATGCTGCCGAAAAGAAAAAGAAAAGTCCTAAATATATGTGTACATGCTGATTTTTTTATCTCTGATAAAAGTGC

Network for GWHGAAEX006304

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00732.18	GMC_oxred_N	38	314	1.60E-29
PF05199.12	GMC_oxred_C	407	552	1.80E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0016614	Molecular Function	oxidoreductase activity, acting on CH-OH group of donors
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.620
SRP064423	SRR2545915	Juvenile tuber	0.620
SRP108465	SRR5643513	five period of Gastrodia elata	6.890
	SRR5643514	five period of Gastrodia elata	3.590
	SRR5643515	five period of Gastrodia elata	3.190
	SRR5643524	five period of Gastrodia elata	5.030
	SRR5643525	five period of Gastrodia elata	4.180
	SRR5643528	five period of Gastrodia elata	1.780
	SRR5643658	five period of Gastrodia elata	2.140
	SRR5643659	five period of Gastrodia elata	0.220
	SRR5643660	five period of Gastrodia elata	0.070
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.030
	SRR5643663	five period of Gastrodia elata	0.030
	SRR5643664	five period of Gastrodia elata	0.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.070
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.620
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.210
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.690
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.980
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.640
SRP279888	Gastro	Gastrodia elata tuber	0.00
	Juven	Juvenile tuber	0.13
	Mother_Gastro	Mother tuber of Gastrodia elata	2.37
	Mother_Juven	Mother tuber of Juvenile	0.80