Gene detail

Detail information of GWHGAAEX006305/evm.TU.scaffold_18.38

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|328541996\|ref\|YP_004302105.1\|	3.00E-82	glycoprotease family [Polymorphum gilvum SL003B-26A1]
KOG	KOG2707	0	Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold)
nr	gi\|672123478\|ref\|XP_008785103.1\|	0	PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform X2 [Phoenix dactylifera]
Swissprot	tr\|O22145\|OSGP2_ARATH	0	Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial {ECO:0000255\|HAMAP-Rule:MF_03179} (Precursor)
trEMBL	tr\|B9IBY1\|B9IBY1_POPTR	0	Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial {ECO:0000256\|HAMAP-Rule:MF_03179}
TAIR	AT2G45270	0	glycoprotease 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000015	1666015	1725496	-

Transcript Sequence
>GWHTAAEX006305 ATTCACTGCTACTACACAAAATCATTTTTATCATTTTAAAGCCCACGGAAAACGTTTCAACCCAGATGGCTTCCTCTCGGCTCTCGACACTCGCCTCCCGCTCCGCTCTTCTCTTAAATTCCTACTTTGCACAATGCCGCGGAGGTGCGTGCTCTATAAACTCCATACGGTCGTTTCGACTGTCCTACAAAATTTGTTTCATTTCATCATTACCCTTATCTAGCGATCAGCGGCTTTCTTTTTCATCTATCACCCCCCGTGGGTGTTCAAGCAGCAAACTGACTCGCGAGAATTTAGTTGTTCTTGGCATTGAGACAAGCTGCGATGATACTGCAGCTGCCATTGTTAGAGGCAATGGGGAAATACTCGGCGAGATTGTATCTTCTCAAGAAGATCTTCTTTCCCGTTATGGAGGTGTTTATCCCAAAATGGCTGAAGAAGCACACTCACTTGTTATTGACCAGGTTGTTCAACAGGCCATGAATATTTCAAAATTGACAGGACAAGATCTCTCTGCTGTTGCTGTCACTATTGGCCCTGGTTTAAGCCTTTGTTTGCGAGATGTCCTCCAAAGGTCAACTATCAGGATTTCAACTATCAGCATCAATGCAAAACACTCAAGAGGATCAATGACAATTGGTGTTACAAAGGCTCAAAGAGTTGCTGGAAGGTTCAATTTGCCTATCATTGGAGTTCATCACATGGAAGCTCATGCTCTAGTTACTAGGTTGGTTGATAGAGAGCTGCAGTTTCCATTCTTAGCTCTTCTTATTTCTGGAGGACACAATCTTCTTGTCTTGGCACGTGGGGTTGGTCATTATGTTCAGCTTGGGACAACGATAGATGATGCCATTGGTGAGGCATTTGATAAAACAGCTAGGTGGCTTGGCCTTGATATGAGTAAAGGTGGTGGTCCTGCAGTTGAAGAACTTGCTCGTGATGGTGATTCAACTTCTTTGAAATTCAAAGTTCCATTGAGGCAATACAAGGACTGCAATTTTTCATACGCTGGCCTGAAAACTCAGGTCAGATTGGCTGTTGAATCTAGAAACGTATGCGTAGACAACAATCCCATTTCTTCTGCTTCCTTTCGAGACAGGAAATCACGAGCAGATATTGCAGCTTCTTTTCAGAGGGTTGCTGTATTACATCTTGAGGAGAGGTGTCAACGTGCTATTGCATGGGCAAAAAGGATGGAATCATCAATTGATTACTTGGTAGTGGCAGGAGGTGTTGCATCAAATCAGTATGTTAGATCTCGACTAATTGATGTTGCGGAGAAGAATAGTATCCGCCTTGTTTGTCCTCCTCCAAAGCTTTGCACGGACAATGGTGTAATGGTTGCTTGGACTGGAATCGAGCACTTACTCTTAGGGGGATTTGGCCTGCCACTGCCTGCACATGAGCTTGAAGATTGCATATGCGACGTGCGGCCGAGATGGCCGTTGGGTGAAGAATACATTGAGGGAAGAAGTGAGGCCCGTTCTTTGAAAAGAGCTCGCATTCATCCTTCGCTAACATCCATCATCCGGAGTTCTACCCGCCAACAAATTTAGGTGCCTGATTAATGCACATCATGATAACGCAGCCATTGATGATGATGCTACTTAACTGATGATATATTATGTCAAAAAAGCCGTGCGGAATAAGTTTTCAAAGTATGGTTTCGGAGATCAACTTTTCTTTGGTCTCCTCATTATTGCTTGCGAACAAAGAGACTCCAGCTTTCCTTGTAATAAGTTTTTTCTGCTACAATGAATCTGTTAAATGCAAAAAGGCTGAAATTTTATTCAGCTCACTTTTTTTGATATATTTTT

Network for GWHGAAEX006305

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00814.24	Peptidase_M22	120	187	1.80E-16
PF00814.24	Peptidase_M22	208	449	3.80E-59

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0002949	Biological Process	tRNA threonylcarbamoyladenosine modification
GO:0004222	Molecular Function	metalloendopeptidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.430
SRP064423	SRR2545915	Juvenile tuber	5.270
SRP108465	SRR5643513	five period of Gastrodia elata	6.850
	SRR5643514	five period of Gastrodia elata	7.240
	SRR5643515	five period of Gastrodia elata	4.790
	SRR5643524	five period of Gastrodia elata	8.570
	SRR5643525	five period of Gastrodia elata	4.900
	SRR5643528	five period of Gastrodia elata	3.680
	SRR5643658	five period of Gastrodia elata	3.870
	SRR5643659	five period of Gastrodia elata	4.670
	SRR5643660	five period of Gastrodia elata	4.220
	SRR5643661	five period of Gastrodia elata	4.660
	SRR5643662	five period of Gastrodia elata	5.430
	SRR5643663	five period of Gastrodia elata	4.940
	SRR5643664	five period of Gastrodia elata	5.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.980
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.100
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.150
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.430
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.860
SRP279888	Gastro	Gastrodia elata tuber	5.16
	Juven	Juvenile tuber	8.87
	Mother_Gastro	Mother tuber of Gastrodia elata	5.54
	Mother_Juven	Mother tuber of Juvenile	8.15