Detail information of GWHGAAEX006306/evm.TU.scaffold_18.39
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|297527407|ref|YP_003669431.1| | 1.00E-74 | 50S ribosomal protein L2 [Staphylothermus hellenicus DSM 12710] |
| KOG | KOG2309 | 6.00E-178 | 60s ribosomal protein L2/L8 |
| nr | gi|743854648|ref|XP_010940992.1| | 0 | PREDICTED: 60S ribosomal protein L8-like [Elaeis guineensis] |
| Swissprot | tr|P29766|RL8_SOLLC | 0 | 60S ribosomal protein L8 |
| trEMBL | tr|M0RUJ1|M0RUJ1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P22610_001} |
| TAIR | AT4G36130 | 6.00E-178 | Ribosomal protein L2 family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000015 | 1829724 | 1835054 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006306
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00181.22 | Ribosomal_L2 | 13 | 90 | 1.10E-18 |
| PF03947.17 | Ribosomal_L2_C | 98 | 230 | 7.80E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02938 | RP-L8e, RPL8 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0015934 | Cellular Component | large ribosomal subunit |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 42.450 |
| SRR2545915 | Juvenile tuber | 59.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 142.920 |
| SRR5643514 | five period of Gastrodia elata | 136.360 | |
| SRR5643515 | five period of Gastrodia elata | 135.110 | |
| SRR5643524 | five period of Gastrodia elata | 139.530 | |
| SRR5643525 | five period of Gastrodia elata | 91.440 | |
| SRR5643528 | five period of Gastrodia elata | 109.210 | |
| SRR5643658 | five period of Gastrodia elata | 86.920 | |
| SRR5643659 | five period of Gastrodia elata | 156.290 | |
| SRR5643660 | five period of Gastrodia elata | 153.610 | |
| SRR5643661 | five period of Gastrodia elata | 178.640 | |
| SRR5643662 | five period of Gastrodia elata | 141.360 | |
| SRR5643663 | five period of Gastrodia elata | 131.840 | |
| SRR5643664 | five period of Gastrodia elata | 138.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 133.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 93.960 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 153.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 123.550 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 130.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 99.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 138.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 118.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 168.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 155.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 182.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 182.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 195.68 |
| Juven | Juvenile tuber | 167.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 119.87 | |
| Mother_Juven | Mother tuber of Juvenile | 121.10 |